View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_high_5 (Length: 454)
Name: NF19909_high_5
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 38949346 - 38949795
Alignment:
| Q |
1 |
atatatttaaggtttgtttgatggctaaaataaaaggacatgataacctaccaaatacatacatacacatatatttcagactagcctaaagcccaatctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38949346 |
atatatttaaggtttgtttgatggctaaaataaaaggacatgataaccaaccaaatacatacatacacatatatttcagactagcctaaagcccaatctg |
38949445 |
T |
|
| Q |
101 |
actccgctcgggtccgaccctagtcttttaaacatgagacaccatgcgacaaacacatcataaagctcaccagatcacaatacaagctgagggtagcaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38949446 |
actccgctcgggtccgaccctagtcttttaaacatgagacaccatgcgacaaacacatcataaagctcaccagatcacagtacaagctgagggtagcaca |
38949545 |
T |
|
| Q |
201 |
tgaggcctaggagttacccacgccccacgcaggtcgaggataacccgtcctaggccgagagttg-ccactttcgtacatgaaggtatgaccgtcaggata |
299 |
Q |
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| T |
38949546 |
tgaggtccgggagttacccacgccccacgcaggtcgaggataactcgtcctaggccgagagttgcccactttcgtacatgaaggtatgaccgtcgggata |
38949645 |
T |
|
| Q |
300 |
aggtttgccaaccaaactctacc---ctactatttatacccatacattagccttggggtcagacatgatatttcttatcctaaattgtgattgcacctct |
396 |
Q |
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| T |
38949646 |
aggtttgccaaccaaactctacctatccactatttatacccatacattagccttggggtcagacatgacatttcttatcctaaattgtgattgcacctct |
38949745 |
T |
|
| Q |
397 |
tgagacttgggcgtcggagcacttgcaggtacacaaacccccttcatctc |
446 |
Q |
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| T |
38949746 |
tgagacttgggcgtcggagcacctgcaggtacacaaacccccttcatctc |
38949795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 399
Target Start/End: Original strand, 30876257 - 30876445
Alignment:
| Q |
213 |
gttacccacgccccacgcaggtcgaggataacccgtcctaggccgagagttgcc-actttcgtacatgaaggtatgaccgtcaggataaggtttgccaac |
311 |
Q |
| |
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||||||||||||| |||||||||||||||||| | | |||||||||||||||| || | | ||| ||||| || | |||| ||||||||| || |
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| T |
30876257 |
gttacccacgccc-acgcaggtcgaggataacttgccttaggccgagagttgcccacgtccatacctgaagatacaattttcagaataaggttttccgct |
30876355 |
T |
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| Q |
312 |
caaactctaccctac---tatttatacccatacattagccttggggtcagacatgatatttcttatcctaaattgtgattgcacctcttga |
399 |
Q |
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| T |
30876356 |
caaaccctaccttaccactatttatacctaggcattagccttgggtt-aggcttgacacttcttatcctcaattgtgattgcacctcttga |
30876445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 386
Target Start/End: Complemental strand, 9415818 - 9415724
Alignment:
| Q |
294 |
aggataaggtttgccaaccaaactctacc---ctactatttatacccatacattagccttggggtcagacatgatatttcttatcctaaattgtga |
386 |
Q |
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|||||||||||||||| |||| | ||||| | ||||||||||||||| |||||||||| | |||| |||||| |||||| |||||||||||| |
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| T |
9415818 |
aggataaggtttgccagccaagccctacctaaccactatttatacccatgcattagcctt-gactcaggtatgatacttcttaccctaaattgtga |
9415724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 437
Target Start/End: Original strand, 23268487 - 23268524
Alignment:
| Q |
400 |
gacttgggcgtcggagcacttgcaggtacacaaacccc |
437 |
Q |
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| T |
23268487 |
gacttgggcgtcggagcacgtgcaggtacacaaccccc |
23268524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 30682180 - 30682143
Alignment:
| Q |
401 |
acttgggcgtcggagcacttgcaggtacacaaaccccc |
438 |
Q |
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||||||||||||||||| ||| |||||||||||||||| |
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| T |
30682180 |
acttgggcgtcggagcaattgtaggtacacaaaccccc |
30682143 |
T |
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