View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_high_6 (Length: 442)
Name: NF19909_high_6
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 33628740 - 33628593
Alignment:
| Q |
29 |
gagacctgcatgaaatgtaatagttttatttgttgtctgtgttaaataaaagtcacaaattaaacgtttaa------acaaaggcatgaaaaggatttag |
122 |
Q |
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| T |
33628740 |
gagacctgcatgaaatgtaatagttttatttgttgtctgtgttaaataaaagtcacaaattaaacgtttaaaacttcacaaaggcatgaaaaggatttag |
33628641 |
T |
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| Q |
123 |
gtctaccggaaattaatggagataaactttcataacttgaggaatcaa |
170 |
Q |
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| T |
33628640 |
gtctaccggaaattaatggagataaactttcataacttgaggaatcaa |
33628593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 215 - 431
Target Start/End: Complemental strand, 33628575 - 33628361
Alignment:
| Q |
215 |
tgacaaatcaacatttgaatcatagtttagagggtattcatatgtagcgtctcacaagactcgaatagaatttcttcctatgaatctatagaagnnnnnn |
314 |
Q |
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| T |
33628575 |
tgacaaatcaacatttgaatcatagtttagagggtatttatatttagcgtctcacaagactcgaatagaatttcttcctatgaacctatagaa-aaaaaa |
33628477 |
T |
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| Q |
315 |
nnttcaaacgtaaaagcaagtttaatgtagcctttctccaaatttttattcaaattcgattgaccaaacnnnnnnnnnnnttacaacttacacaaatatt |
414 |
Q |
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| T |
33628476 |
aattcaaacctaaaagcaagtttaatgtggcctatctccaaatttttattcaaattcgattgaccaaac-aaaaaaaaaattacaactcacacaaatatt |
33628378 |
T |
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| Q |
415 |
tggagcttaaccccttt |
431 |
Q |
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| T |
33628377 |
tggagcttagccccttt |
33628361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 33621425 - 33621369
Alignment:
| Q |
37 |
catgaaatgtaatagttttatttgttgtctgtgttaaataaaagtcacaaattaaac |
93 |
Q |
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| T |
33621425 |
catgaaatgtaatagttttatttgtagtttgtgttaaacaaaagtcacgaaataaac |
33621369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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