View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_high_7 (Length: 405)
Name: NF19909_high_7
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_7 |
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| [»] scaffold0098 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 360
Target Start/End: Original strand, 27461308 - 27461655
Alignment:
| Q |
13 |
gagatgaagaactaagggtgtgcacacttctttgagtttgatattgtatttggggtttgtcgaaattcaagataaattgacgcaatttttgataaattag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27461308 |
gagatgaagaactaagggtgtgcacacttctttgagttagatattgtatttggggtttgtcgaaattcaagataaattgacgcaatttttaataaattag |
27461407 |
T |
|
| Q |
113 |
agaccaagnnnnnnnttgacgtaatttttaaaacacattccaagacatatcaaataaaatgtgaaacacnnnnnnnnaataaatcaatacaatgttcttc |
212 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27461408 |
agaccaagaaaaaaattgatgtaatttttaaaacacattccaagacatatcaaataaaatgtgaaacacttttttttaataaatcaatacaatgttcttc |
27461507 |
T |
|
| Q |
213 |
aacctcaatttagaaccactgatgaggatagaaggggcaaaaaatgtcatgaccagctagaaatccattttggtttgtatctctcaaatacaaatcatgt |
312 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27461508 |
aacctcaatttagaaccactgatgaggacagaaggggcaaaaaatgtcatgaccagctagaaatccattttggtttgtatctctcaaatacaaattatgt |
27461607 |
T |
|
| Q |
313 |
aaaacttcttttcttttaaacattttgaggacagaaaatcagttaccc |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27461608 |
aaaacttcttttcttttaaacattttgaggacagaaaatcagttaccc |
27461655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 217 - 340
Target Start/End: Original strand, 27481535 - 27481658
Alignment:
| Q |
217 |
tcaatttagaaccactgatgaggatagaaggggcaaaaaatgtcatgaccagctagaaatccattttggtttgtatctctcaaatacaaatcatgtaaaa |
316 |
Q |
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|||||||||||||||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27481535 |
tcaatttagaaccactgatgtggacagaaggggcaaaaattgtcatgaccagccagaaatccattttggtttgtatctctcaaatacaaattatgtaaaa |
27481634 |
T |
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| Q |
317 |
cttcttttcttttaaacattttga |
340 |
Q |
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| T |
27481635 |
cttcttttcctttaaacattttga |
27481658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 251 - 340
Target Start/End: Complemental strand, 27521859 - 27521770
Alignment:
| Q |
251 |
aaaaaatgtcatgaccagctagaaatccattttggtttgtatctctcaaatacaaatcatgtaaaacttcttttcttttaaacattttga |
340 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
27521859 |
aaaaaatgtcatgaccagccagaaatccattttggtttgtatctctcaaatacaaattatgtaaaacttattttcttttaaacattttga |
27521770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 40973935 - 40974041
Alignment:
| Q |
13 |
gagatgaagaactaagggtgtgcacacttctttgagtttgatattgtatttggggtttgtcgaaattcaagataaattgacgcaatttttgataaattag |
112 |
Q |
| |
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||||||||||| |||||||| |||||| |||| |||||||||||||||| | |||||| |||| ||||||| | ||| ||||||| ||||||||| |
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| T |
40973935 |
gagatgaagaagagagggtgtgaacactt-tttgggtttgatattgtattttgcgtttgtataaatataagataactcgacctaatttttaataaattag |
40974033 |
T |
|
| Q |
113 |
agaccaag |
120 |
Q |
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||||||| |
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| T |
40974034 |
tgaccaag |
40974041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 193 - 340
Target Start/End: Original strand, 1757539 - 1757684
Alignment:
| Q |
193 |
aaatcaatacaatgttcttcaacctcaatttagaaccactgatgaggatagaaggggcaaaaaatgtcatgaccagctagaaatccattttggtttgtat |
292 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||||||||| ||||||| |
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| T |
1757539 |
aaatcaatataatgttcttcaacctcaatttagaaccactgatgtggacagaaggggcaaaaaatgtcatgaccagccag-aatccattttgatttgtat |
1757637 |
T |
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| Q |
293 |
ctctcaaatacaaatcatgtaaaacttcttttcttttaaacattttga |
340 |
Q |
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|||||||| |||||| ||||||||||||||||||| |||||||||||| |
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| T |
1757638 |
ctctcaaa-acaaattatgtaaaacttcttttcttctaaacattttga |
1757684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 340
Target Start/End: Complemental strand, 29569035 - 29568931
Alignment:
| Q |
242 |
agaaggggcaaaaaatgtcatgaccagctagaaatccattttggtt-------tgtatctctcaaatacaaatcatgtaaaacttcttttcttttaaaca |
334 |
Q |
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|||||||||||||| ||||||||||| |||| |||||||||||| | ||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
29569035 |
agaaggggcaaaaagattcatgaccagccagaa-tccattttggttcaagttgtatatctctcaaatacaaagcatgtaaaatttcttttcttttaaaca |
29568937 |
T |
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| Q |
335 |
ttttga |
340 |
Q |
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|||||| |
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| T |
29568936 |
ttttga |
29568931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 3734764 - 3734623
Alignment:
| Q |
13 |
gagatgaagaactaagggtgtgcacacttctttgag--tttgatattgtatttggggtttgtcgaaattcaagataaattgacgcaatttttgataaatt |
110 |
Q |
| |
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||||||||||| ||| ||||||||| |||| |||| |||||||||||||| || |||||||||||| ||||||||||||| ||||||||| |||||| |
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| T |
3734764 |
gagatgaagaataaagagtgtgcacagttctatgagattttgatattgtattaggtgtttgtcgaaatacaagataaattgatgcaatttttaataaatc |
3734665 |
T |
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| Q |
111 |
agagaccaagnnnnnnnttgacgtaatttttaaaacacattc |
152 |
Q |
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| ||||||| |||||||||||||||||||| |||| |
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| T |
3734664 |
aaagaccaaaaaattaattgacgtaatttttaaaacatattc |
3734623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 49084 - 49190
Alignment:
| Q |
13 |
gagatgaagaactaagggtgtgcacacttctttgagtttgatattgtatttggggtttgtcgaaattcaagataaattgacgcaatttttgataaattag |
112 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| |||||||||||||||| | |||||| |||| ||||||| | ||| ||||||| ||||||||| |
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| T |
49084 |
gagatgaagaagagagggtgtgcacactt-tttgggtttgatattgtattttgcgtttgtataaatataagataactcgacctaatttttaataaattag |
49182 |
T |
|
| Q |
113 |
agaccaag |
120 |
Q |
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||||||| |
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| T |
49183 |
tgaccaag |
49190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 42129693 - 42129745
Alignment:
| Q |
13 |
gagatgaagaactaagggtgtgcacacttctttgagtttgatattgtatttgg |
65 |
Q |
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|||||||||||| |||||||| |||||| ||| ||||||||||||||||||| |
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| T |
42129693 |
gagatgaagaacagagggtgtgtacacttttttaagtttgatattgtatttgg |
42129745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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