View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19909_low_1 (Length: 707)

Name: NF19909_low_1
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19909_low_1
NF19909_low_1
[»] chr1 (20 HSPs)
chr1 (11-691)||(6592227-6592907)
chr1 (39-687)||(6601486-6602129)
chr1 (234-392)||(2010402-2010560)
chr1 (125-393)||(2011703-2011971)
chr1 (193-382)||(3340317-3340509)
chr1 (138-272)||(3372444-3372578)
chr1 (125-277)||(2006195-2006347)
chr1 (493-613)||(3361842-3361962)
chr1 (189-383)||(3361523-3361720)
chr1 (300-382)||(2948497-2948579)
chr1 (494-548)||(3340636-3340690)
chr1 (335-392)||(2019716-2019773)
chr1 (131-275)||(3218662-3218806)
chr1 (320-391)||(3218540-3218611)
chr1 (319-382)||(3349320-3349383)
chr1 (411-469)||(3349433-3349491)
chr1 (311-384)||(3372620-3372693)
chr1 (312-373)||(3378665-3378726)
chr1 (335-392)||(4335023-4335080)
chr1 (577-669)||(3218247-3218339)
[»] chr2 (6 HSPs)
chr2 (153-289)||(20934229-20934365)
chr2 (138-276)||(39273803-39273941)
chr2 (189-276)||(20952809-20952896)
chr2 (124-277)||(20923217-20923370)
chr2 (492-545)||(20923600-20923653)
chr2 (340-392)||(20923436-20923488)
[»] chr5 (1 HSPs)
chr5 (301-382)||(17969781-17969862)
[»] chr4 (1 HSPs)
chr4 (498-551)||(21237664-21237717)


Alignment Details
Target: chr1 (Bit Score: 661; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 11 - 691
Target Start/End: Complemental strand, 6592907 - 6592227
Alignment:
Q  11 attgttacatttgcttgtttatttacagtaacctaatttgttttctgaatattggagtttttgtctgactatatctatgaagagaagagaacaatcccag 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6592907 attgttacattagcttgtttatttacagtaacctaatttgttttctgaatattggagtttttgtctgactatatctatgaagagaagagaacagtcccag 6592808  T
Q  111 tctccttgcgtatcagacgaggagcccgatagagttagtagtttaccaggccatgtaatagaccatattctctcgattttgccaattaaggaagcagcca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592807 tctccttgcgtatcagacgaggagcccgatagagttagtagtttaccaggccatgtaatagaccatattctctcgattttgccaattaaggaagcagcca 6592708  T
Q  211 gaacaagtattttatctacctactggaggtacaaatggaccacacttccaaatcttgtgtttgataatgaatgtctctccgaaacttctaaagacctttt 310  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592707 gaacaagtattttatctaccaactggaggtacaaatggaccacacttccaaatcttgtgtttgataatgaatgtctctccgaaacttctaaagacctttt 6592608  T
Q  311 agttatcaagagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagttcaagctctctcgggatcacattgatgtc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592607 agttatcaagagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagttcaagctctctcgggatcacattgatgtc 6592508  T
Q  411 actgatattgatcggtggactctttatctaaccagatggcaggttaaagagtttgtgttagaaatctggaaaaacccagtccaacgctataaaatacctt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6592507 actgatattgatcggtggactctttatctaaccagatggcaggttaaagagtttgtgttagaaatctggaaaaacccagaccaacgctataaaatacctt 6592408  T
Q  511 catggttattttcttgtcaaagtttgcatcatttagaattattagaatgctggcttataccaccatcaacatttcaaggtttcaagaacttgaagagtct 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592407 catggttattttcttgtcaaagtttgcatcatttagaattattagaatgctggcttataccaccatcaacatttcaaggtttcaagaacttgaagagtct 6592308  T
Q  611 tgatctgcaatatgttacattgactaaagatgctgttgaaaacttaatatccagctgccttctgcttgaacgattgatatt 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6592307 tgatctgcaatatgttacattgactaaagatgctgttgaaaacttaatatccagctgccttatgcttgaacgattgatatt 6592227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 39 - 687
Target Start/End: Complemental strand, 6602129 - 6601486
Alignment:
Q  39 taacctaatttgttttctgaatattggagtttttgtctgactatatctatgaagagaagagaacaatcccagtctccttgcgtatcagacgaggagcccg 138  Q
    ||||||| |||||||||||| | |||||  |||||||||| ||||||||  |||||||| |||||||||||||||||||||||| | || | ||||||||    
T  6602129 taacctattttgttttctgattcttggatcttttgtctgaatatatcta--aagagaagggaacaatcccagtctccttgcgtaacggatgcggagcccg 6602032  T
Q  139 atagagttagtagtttaccaggccatgtaatagaccatattctctcgattttgccaattaaggaagcagccagaacaagtattttatctacctactggag 238  Q
    ||||| |||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||  ||||||||||||||||| ||| | |||||    
T  6602031 atagaattagtagtttaccaggtcatataatagaccaaattctctcaattttgccaattaaggaagcagtgagaacaagtattttatcaaccaaatggag 6601932  T
Q  239 gtacaaatggaccacacttccaaatcttgtgtttgataatgaatgtctctccgaaacttctaaagaccttttagttatcaagagcaagctttcaagaatt 338  Q
    |||||||||| |||||||||||||||||||||||||||   ||||| ||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||    
T  6601931 gtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctccgacacttctgaagaccttttagttatcaagagcaaactttcgagaatt 6601832  T
Q  339 attgatcatgtacttttactccgttctggaccaatcaaaaagttcaagctctc---tcgggatcacattgatgtcactgatattgatcggtggactcttt 435  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||   ||| || | |||||  || || ||||||||||| |||||||||     
T  6601831 attgatcatgtacttttactccattctgggccaatcaaaaagttcaagctctcccatcgcgagctcattggagtgaccgatattgatcgatggactcttc 6601732  T
Q  436 atctaaccagatggcaggttaaagagtttgtgttagaaatctggaaaaacccagtccaacgctataaaataccttcatggttattttcttgtcaaagttt 535  Q
    ||||||||||| |||  ||||||||||||||| | |||||||||||      ||  ||||||||||||||||||||||| ||||||||||||||| ||||    
T  6601731 atctaaccagaaggcctgttaaagagtttgtgctggaaatctggaa------agggcaacgctataaaataccttcatgcttattttcttgtcaaggttt 6601638  T
Q  536 gcatcatttagaattattagaatgctggcttataccaccatcaacatttcaaggtttcaagaacttgaagagtcttgatctgcaatatgttacattgact 635  Q
     |||||||||||||||||  | || ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| ||| ||    
T  6601637 acatcatttagaattatttaactgttggcttataccaccatcaacatttcaaggattcaggaacttgaagagtcttgatctgcaacatgttaccttgtct 6601538  T
Q  636 aaagatgctgttgaaaacttaatatccagctgccttctgcttgaacgattga 687  Q
     |||||||| |||||||||| ||||| |  |||| | |||||||||||||||    
T  6601537 caagatgcttttgaaaacttgatatctacttgccctttgcttgaacgattga 6601486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 234 - 392
Target Start/End: Original strand, 2010402 - 2010560
Alignment:
Q  234 tggaggtacaaatggaccacacttccaaatcttgtgtttgataatgaatgtctctccgaaacttctaaagaccttttagttatcaagagcaagctttcaa 333  Q
    ||||||||||||||||||||| | ||||||||||||||||||||  ||||| |||| | ||| ||  |   || |||||||||| |||| |||||||       
T  2010402 tggaggtacaaatggaccacaataccaaatcttgtgtttgataaacaatgtgtctctgcaacatcccatcgccctttagttatcgagagaaagcttttgg 2010501  T
Q  334 gaattattgatcatgtacttttactccgttctggaccaatcaaaaagttcaagctctct 392  Q
     ||||||||||||||||||||||||   ||| || |||||||| |||||||||||||||    
T  2010502 caattattgatcatgtacttttactttattccgggccaatcaacaagttcaagctctct 2010560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 125 - 393
Target Start/End: Original strand, 2011703 - 2011971
Alignment:
Q  125 agacgaggagcccgatagagttagtagtttaccaggccatgtaatagaccatattctctcgattttgccaattaaggaagcagccagaacaagtatttta 224  Q
    |||||||||||| |||||| |||||  |||||||||  ||||||||||||  ||| | ||    |||||||||| ||| |  |  |||||||||||||||    
T  2011703 agacgaggagccggatagaattagtgttttaccaggtgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtatttta 2011802  T
Q  225 tctacctactggaggtacaaatggaccacacttccaaatcttgtgtttgataatgaatgtctctccgaaacttctaaagaccttttagttatcaagagca 324  Q
    || | | | |||||||||||||||| |||| | ||||||||||||||||||    ||||| | || | ||| ||| || ||| |  || ||||||||| |    
T  2011803 tcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatctgaacaccctgcagctatcaagagaa 2011902  T
Q  325 agctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagttcaagctctctc 393  Q
    ||||||    |||||| || ||||||||||||||   || ||| |||||||| ||||||||||||||||    
T  2011903 agcttttggcaattatcgaccatgtacttttactttattatgggccaatcaacaagttcaagctctctc 2011971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 382
Target Start/End: Original strand, 3340317 - 3340509
Alignment:
Q  193 caattaaggaagcagccagaacaagtattttatctacctactggaggtacaaatggaccacacttccaaatcttgtgtttgataatgaatgtctctcc-- 290  Q
    |||||||||||||||  ||||||||| ||||||| | | | |||||  | |||||| ||||  | ||| ||||||||||||||  ||||||| | ||       
T  3340317 caattaaggaagcagtaagaacaagtgttttatcgagcaattggagaaagaaatggtccactttaccagatcttgtgtttgatcgtgaatgtgtatctac 3340416  T
Q  291 -gaaacttctaaagaccttttagttatcaagagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagtt 382  Q
     |||||||| ||| ||| || ||||||  |||||||| ||| ||||||| ||||||||||||||||||| | |||||| |||||||| |||||    
T  3340417 tgaaacttccaaacacccttcagttattgagagcaagtttttaagaattgttgatcatgtacttttacttcattctgggccaatcaacaagtt 3340509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 138 - 272
Target Start/End: Original strand, 3372444 - 3372578
Alignment:
Q  138 gatagagttagtagtttaccaggccatgtaatagaccatattctctcgattttgccaattaaggaagcagccagaacaagtattttatctacctactgga 237  Q
    |||||| ||||| | |||||||| ||||||||||| || ||||||||  |  |||||||||| |||||||  ||||||||| ||||||| | |  |||||    
T  3372444 gatagaattagttgcttaccaggtcatgtaatagatcagattctctcactcatgccaattaaagaagcagtgagaacaagtgttttatccagcagctgga 3372543  T
Q  238 ggtacaaatggaccacacttccaaatcttgtgttt 272  Q
    || ||||||||  |||||| |||||||||||||||    
T  3372544 ggaacaaatggtacacactaccaaatcttgtgttt 3372578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 125 - 277
Target Start/End: Original strand, 2006195 - 2006347
Alignment:
Q  125 agacgaggagcccgatagagttagtagtttaccaggccatgtaatagaccatattctctcgattttgccaattaaggaagcagccagaacaagtatttta 224  Q
    ||||| |||||| |||||| |||||  ||||| |||  ||||||||||| | ||||| ||    |||||||||| |||||| |  ||||||||| |||||    
T  2006195 agacggggagccggatagaattagttatttactaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgtttta 2006294  T
Q  225 tctacctactggaggtacaaatggaccacacttccaaatcttgtgtttgataa 277  Q
    || | | | ||||||||||||||| ||||| | ||||||||||||||||||||    
T  2006295 tccaacaaatggaggtacaaatgggccacaataccaaatcttgtgtttgataa 2006347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 493 - 613
Target Start/End: Original strand, 3361842 - 3361962
Alignment:
Q  493 aacgctataaaataccttcatggttattttcttgtcaaagtttgcatcatttagaattattagaatgctggcttataccaccatcaacatttcaaggttt 592  Q
    |||||||||| || ||||  || ||||| |||||||||||||| |||||||||||||||  |   || ||||||| ||| ||| |||| ||| |||| ||    
T  3361842 aacgctataagatcccttggtgcttattctcttgtcaaagtttacatcatttagaattaaaatgctgttggcttaaacctccaacaacgtttgaaggctt 3361941  T
Q  593 caagaacttgaagagtcttga 613  Q
    |||||||||||| ||||||||    
T  3361942 caagaacttgaaaagtcttga 3361962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 189 - 383
Target Start/End: Original strand, 3361523 - 3361720
Alignment:
Q  189 ttgccaattaaggaagcagccagaacaagtattttatctacctactggaggtacaaatggaccacacttccaaatcttgtgtttgataatgaatgtctct 288  Q
    |||||||| ||||||||||  ||||||||||||||||| | | | |||||  ||||||||  ||| || ||||||||||| ||||||||  | ||  |||    
T  3361523 ttgccaatcaaggaagcagtgagaacaagtattttatccagcaaatggagtaacaaatggtacacgctaccaaatcttgtatttgataaacattgcatct 3361622  T
Q  289 ccgaaac---ttctaaagaccttttagttatcaagagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagttc 383  Q
    | || ||   |||  |||||| ||  |||||||| | |||| |||  |||||| ||||||||||||||||||| | || ||| |||||||| ||||||    
T  3361623 ctgatacagattcccaagacccttcggttatcaataacaagtttttgagaattgttgatcatgtacttttacttcattatgggccaatcaacaagttc 3361720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 2948579 - 2948497
Alignment:
Q  300 aaagaccttttagttatcaagagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagtt 382  Q
    ||||||| || ||||||  |||||||| |||  |||||| ||||||||||||||||||| | |||||| |||||||| |||||    
T  2948579 aaagacccttcagttattgagagcaagtttttgagaattgttgatcatgtacttttacttcattctgggccaatcaacaagtt 2948497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 494 - 548
Target Start/End: Original strand, 3340636 - 3340690
Alignment:
Q  494 acgctataaaataccttcatggttattttcttgtcaaagtttgcatcatttagaa 548  Q
    |||||||||||||||||  || ||||| ||||||||||||||||| |||||||||    
T  3340636 acgctataaaataccttgctgcttattctcttgtcaaagtttgcaacatttagaa 3340690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 2019716 - 2019773
Alignment:
Q  335 aattattgatcatgtacttttactccgttctggaccaatcaaaaagttcaagctctct 392  Q
    ||||||||||||||||||||||||   ||| || |||||||| |||||||||||||||    
T  2019716 aattattgatcatgtacttttactttattccgggccaatcaacaagttcaagctctct 2019773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 275
Target Start/End: Complemental strand, 3218806 - 3218662
Alignment:
Q  131 ggagcccgatagagttagtagtttaccaggccatgtaatagaccatattctctcgattttgccaattaaggaagcagccagaacaagtattttatctacc 230  Q
    |||||| |||||| ||||| | |||||||| ||||||||||| || ||||||||    |||||||||| ||||||||  | ||||||| |||| || |      
T  3218806 ggagccggatagaattagttgcttaccaggtcatgtaatagatcagattctctcatacttgccaattagggaagcagtgaaaacaagtgttttgtccagt 3218707  T
Q  231 tactggaggtacaaatggaccacacttccaaatcttgtgtttgat 275  Q
     | |||||| | ||||||  |||||| |||||| |||||||||||    
T  3218706 gaatggaggaataaatggcacacactaccaaatattgtgtttgat 3218662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 391
Target Start/End: Complemental strand, 3218611 - 3218540
Alignment:
Q  320 gagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagttcaagctctc 391  Q
    ||||||||| |  |||||| |||||||||||||| |||| | ||||||||| ||||| |||||| |||||||    
T  3218611 gagcaagctgttgagaattgttgatcatgtacttctacttcattctggaccgatcaacaagttccagctctc 3218540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 3349320 - 3349383
Alignment:
Q  319 agagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagtt 382  Q
    |||||||| |||  |||||||||||||||||||||||||| | |||||| | |||||| |||||    
T  3349320 agagcaagtttttgagaattattgatcatgtacttttacttcattctgggctaatcaacaagtt 3349383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 469
Target Start/End: Original strand, 3349433 - 3349491
Alignment:
Q  411 actgatattgatcggtggactctttatctaaccagatggcaggttaaagagtttgtgtt 469  Q
    ||||||||||||||||||| |||| |||||||| || | ||  ||||||||||||||||    
T  3349433 actgatattgatcggtggattcttcatctaaccggaagacatattaaagagtttgtgtt 3349491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 3372620 - 3372693
Alignment:
Q  311 agttatcaagagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagttca 384  Q
    ||||||||| | |||| |||  |||||| ||||||||||||||||||  | |||||| |||||||| |||||||    
T  3372620 agttatcaataacaagtttttgagaattgttgatcatgtacttttacaacattctggtccaatcaacaagttca 3372693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 3378665 - 3378726
Alignment:
Q  312 gttatcaagagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaat 373  Q
    |||||| |||||||| |||  |||||||| ||||||||||||||||| | |||||| |||||    
T  3378665 gttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 3378726  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 4335080 - 4335023
Alignment:
Q  335 aattattgatcatgtacttttactccgttctggaccaatcaaaaagttcaagctctct 392  Q
    |||| ||||||||||||||||| | | ||||||||||||||| | ||||||| |||||    
T  4335080 aattgttgatcatgtacttttagttcattctggaccaatcaacatgttcaagttctct 4335023  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 577 - 669
Target Start/End: Complemental strand, 3218339 - 3218247
Alignment:
Q  577 caacatttcaaggtttcaagaacttgaagagtcttgatctgcaatatgttacattgactaaagatgctgttgaaaacttaatatccagctgcc 669  Q
    |||| ||| |||| |||||||||||||| |||||||| ||  |  | |||||| || || |||||||| |||||||||| |||||| ||||||    
T  3218339 caacgtttaaaggcttcaagaacttgaaaagtcttgaactatatcaggttacaatggctcaagatgcttttgaaaacttgatatccggctgcc 3218247  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 153 - 289
Target Start/End: Original strand, 20934229 - 20934365
Alignment:
Q  153 ttaccaggccatgtaatagaccatattctctcgattttgccaattaaggaagcagccagaacaagtattttatctacctactggaggtacaaatggacca 252  Q
    |||||||| |||||||||||||| |||||  |    |||||||||| ||||||||  ||||||||| |||||||||   | |||||| ||||||||  ||    
T  20934229 ttaccaggtcatgtaatagaccagattctgacttacttgccaattagggaagcagtgagaacaagtgttttatctaaaaaatggaggaacaaatggtaca 20934328  T
Q  253 cacttccaaatcttgtgtttgataatgaatgtctctc 289  Q
    |||| |||||||||||||||||||   ||||||||||    
T  20934329 cactcccaaatcttgtgtttgatagacaatgtctctc 20934365  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 39273803 - 39273941
Alignment:
Q  138 gatagagttagtagtttaccaggccatgtaatagaccatattctctcgattttgccaattaaggaagcagccagaacaagtattttatctacctactgga 237  Q
    |||||| ||||| | ||||| || ||||||||||| || ||||| ||    |||||||||| ||||||||  ||||||||| |||| || | | | ||||    
T  39273803 gatagaattagttgcttaccgggtcatgtaatagatcagattctgtcttgcttgccaattagggaagcagtgagaacaagtgttttgtccagccaatgga 39273902  T
Q  238 ggtacaaatggaccacacttccaaatcttgtgtttgata 276  Q
    |||||||||||  |||||| |||||||||||||||||||    
T  39273903 ggtacaaatggtacacactaccaaatcttgtgtttgata 39273941  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 276
Target Start/End: Original strand, 20952809 - 20952896
Alignment:
Q  189 ttgccaattaaggaagcagccagaacaagtattttatctacctactggaggtacaaatggaccacacttccaaatcttgtgtttgata 276  Q
    |||| ||||| ||| ||||  ||||||||| |||||||||   | |||||| ||||||||| ||||||||||||||||||||||||||    
T  20952809 ttgcaaattagggatgcagtgagaacaagtgttttatctagaaaatggaggaacaaatggaacacacttccaaatcttgtgtttgata 20952896  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 277
Target Start/End: Original strand, 20923217 - 20923370
Alignment:
Q  124 cagacgaggagcccgatagagttagtagtttaccaggccatgtaatagaccatattctctcgattttgccaattaaggaagcagccagaacaagtatttt 223  Q
    ||||| ||||| |||||||| ||||| | |||||||  ||| ||||||||||| |||| ||    ||| |||| ||||||||||  ||||||||| ||||    
T  20923217 cagacaaggagtccgatagaattagttgcttaccagatcatataatagaccattttctttcacgcttgtcaatcaaggaagcagggagaacaagtgtttt 20923316  T
Q  224 atctacctactggaggtacaaatggaccacacttccaaatcttgtgtttgataa 277  Q
    ||||| | | |||||| | |||||| ||||||  ||  |||||||||| |||||    
T  20923317 atctaacaaatggaggaaaaaatggtccacacaaccggatcttgtgttcgataa 20923370  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 492 - 545
Target Start/End: Original strand, 20923600 - 20923653
Alignment:
Q  492 caacgctataaaataccttcatggttattttcttgtcaaagtttgcatcattta 545  Q
    ||||||||||| |||||||  || ||||| |||||||||||||| |||||||||    
T  20923600 caacgctataacataccttggtgcttattctcttgtcaaagtttacatcattta 20923653  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 20923436 - 20923488
Alignment:
Q  340 ttgatcatgtacttttactccgttctggaccaatcaaaaagttcaagctctct 392  Q
    |||| |||||||||||||| | |||||| |||||||| ||||||||| |||||    
T  20923436 ttgaccatgtacttttacttcattctgggccaatcaacaagttcaagatctct 20923488  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 382
Target Start/End: Original strand, 17969781 - 17969862
Alignment:
Q  301 aagaccttttagttatcaagagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagtt 382  Q
    ||||| ||| ||||||| || ||||| |||  ||||| |||||||||||||||||||| | ||| || |||||||| |||||    
T  17969781 aagacttttcagttatcgagggcaagtttttgagaatcattgatcatgtacttttacttcattcagggccaatcaacaagtt 17969862  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 551
Target Start/End: Original strand, 21237664 - 21237717
Alignment:
Q  498 tataaaataccttcatggttattttcttgtcaaagtttgcatcatttagaatta 551  Q
    ||||| |||||||  || ||||| |||||||||||||| |||||||||||||||    
T  21237664 tataagataccttggtgcttattctcttgtcaaagtttacatcatttagaatta 21237717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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