View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19909_low_10 (Length: 401)
Name: NF19909_low_10
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 27215239 - 27214857
Alignment:
| Q |
1 |
atgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27215239 |
atgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccagcaacattg |
27215140 |
T |
|
| Q |
101 |
gtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtggga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27215139 |
gtagaaataaccgtagcaacaaacgggggacaagatttctatgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtggga |
27215040 |
T |
|
| Q |
201 |
gtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaa |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
27215039 |
gtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtgtgtccttcagagctccaagtgataggtactgatgggagtgtggttgcttgtaa |
27214940 |
T |
|
| Q |
301 |
gagcgcttgtttggctttaaacgaggataaatattgttgccgtggagattacaataccgaagaaaaatgtccacccacagact |
383 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27214939 |
gagcgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaaaaatgtccacccacagact |
27214857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 27432948 - 27432566
Alignment:
| Q |
1 |
atgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattg |
100 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
27432948 |
atgctccaacaacaatggaaagttcagttgtgccaccgccgattgtgcctctggtcaagtcggttgtaacggtgctggcgcaatcccaccagcaacattg |
27432849 |
T |
|
| Q |
101 |
gtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtggga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432848 |
gtagaaataaccgtagcaacaaacgggggacaagatttctatgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtggga |
27432749 |
T |
|
| Q |
201 |
gtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaa |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27432748 |
gtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctccaagtgataggttctgatgggagtgtggttgcttgtaa |
27432649 |
T |
|
| Q |
301 |
gagcgcttgtttggctttaaacgaggataaatattgttgccgtggagattacaataccgaagaaaaatgtccacccacagact |
383 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432648 |
gagcgcttgtttggctttaaacgaagataaatattgttgtcgtggagattacaataccgaagaaaaatgtccacccacagact |
27432566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 27443662 - 27444044
Alignment:
| Q |
1 |
atgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27443662 |
atgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccagcaacattg |
27443761 |
T |
|
| Q |
101 |
gtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtggga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27443762 |
gtagaaataaccgtagcaacaaacgggggacaagatttctaagatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtggga |
27443861 |
T |
|
| Q |
201 |
gtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaa |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
27443862 |
gtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtgtgtccttcagagctccaagtgataggtactgatgggagtgtggttgcttgtaa |
27443961 |
T |
|
| Q |
301 |
gagcgcttgtttggctttaaacgaggataaatattgttgccgtggagattacaataccgaagaaaaatgtccacccacagact |
383 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27443962 |
gagcgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaaaaatgtccacccacagact |
27444044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 27221201 - 27220823
Alignment:
| Q |
1 |
atgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27221201 |
atgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcggttgcaacggtgctggggcaatcccaccagcaacattg |
27221102 |
T |
|
| Q |
101 |
gtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtggga |
200 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27221101 |
gtagaaataacggtagcaacagacgggggacaagacttctacgatgtgagcaatgtggacggattcaacgtgccaatgtctgtaacgccacaaggtggga |
27221002 |
T |
|
| Q |
201 |
gtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaa |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||| || |||||| |||||||||||||| |||| ||||| |
|
|
| T |
27221001 |
gtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctccaagttattggtactgatgggagtgtgattgcctgtaa |
27220902 |
T |
|
| Q |
301 |
gagcgcttgtttggctttaaacgaggataaatattgttgccgtggagattacaataccgaagaaaaatgtccacccaca |
379 |
Q |
| |
|
||| ||||||||||||||||| || |||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
27220901 |
gagtgcttgtttggctttaaatgaagataaatattgttgtcgtggagatttcaatactgaagaaaaatgtccacccaca |
27220823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 27207860 - 27207486
Alignment:
| Q |
9 |
acaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaat |
108 |
Q |
| |
|
||||||| |||| ||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27207860 |
acaacaacggaaggttcagctgcgccaccgccgattgtgcctccggtcaagtcggttgcaacggtgctggcgcaatcccaccagcaacactggtagaaat |
27207761 |
T |
|
| Q |
109 |
aaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgac |
208 |
Q |
| |
|
||| ||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||||| |
|
|
| T |
27207760 |
aacaatagcatccaacgggggacaagatttctacgatgtgagcaatgttgatgggttcaatgtgcccatgtccgtaatgccacaaggtgggagtggtgac |
27207661 |
T |
|
| Q |
209 |
tgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaagagcgctt |
308 |
Q |
| |
|
|||||||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27207660 |
tgcaaaaccgctagttgtcctaggaacattaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtgtttgcttgtaagagcgctt |
27207561 |
T |
|
| Q |
309 |
gtttggctttaaacgaggataaatattgttgccgtggagattacaataccgaagaaaaatgtccacccacagact |
383 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
27207560 |
gtttggctttaaaggaagataaatattgttgtcgtggagatttcaatactgaagaaaaatgtccacccacagact |
27207486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 10 - 379
Target Start/End: Complemental strand, 27389153 - 27388784
Alignment:
| Q |
10 |
caacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaata |
109 |
Q |
| |
|
|||||| ||| |||||| |||||||| ||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
27389153 |
caacaacggacagtttacttgtgccactgccgattgtgcatctggtcaagttgcatgcaatggtgctggcgcaatcccaccagcaactttggttgaaatt |
27389054 |
T |
|
| Q |
110 |
accgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgact |
209 |
Q |
| |
|
|| || ||| |||| || |||||||||||||||||||||||||| || || || ||||||||||||||||| ||||| |||||||| || ||||| || | |
|
|
| T |
27389053 |
acagtggcatcaaatggaggacaagatttctacgatgtgagcaacgttgacggtttcaacgtgccaatgtccgtaactccacaaggcggaagtggcgatt |
27388954 |
T |
|
| Q |
210 |
gcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaagagcgcttg |
309 |
Q |
| |
|
||||| | || || ||||| | ||||| || ||||||||| | ||||| || | | ||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
27388953 |
gcaaatcctctagctgtccagcaaacatcaactctgtgtgtcccgcggagcttcaattaaaaggttctgatggaagtgtcgttgcttgtaagagtgcttg |
27388854 |
T |
|
| Q |
310 |
tttggctttaaacgaggataaatattgttgccgtggagattacaataccgaagaaaaatgtccacccaca |
379 |
Q |
| |
|
||||||||| || ||| |||||||||| |||||| || ||| ||||| | || ||||||||||||| |
|
|
| T |
27388853 |
tttggcttttaataccgatcaatattgttgtcgtggaagtttcaacaccgaggcaacatgtccacccaca |
27388784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 10 - 375
Target Start/End: Complemental strand, 27410109 - 27409744
Alignment:
| Q |
10 |
caacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaata |
109 |
Q |
| |
|
|||||| | ||||||||| |||||||| |||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||| || || ||||| |
|
|
| T |
27410109 |
caacaaagaaaagtttagttgtgccacagccgattgtgggtctggtcaagtggggtgcaatggtgctggcgcaatcccaccagcaactttagttgaaatt |
27410010 |
T |
|
| Q |
110 |
accgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgact |
209 |
Q |
| |
|
||| | ||| |||| || |||||||||||||||||||||||||| || || || |||||||||||||| | |||||| ||||||||||||| ||| | |
|
|
| T |
27410009 |
accatggcatcaaatggaggacaagatttctacgatgtgagcaacgttgacgggttcaacgtgccaatttttgtaactccacaaggtgggaatggccctt |
27409910 |
T |
|
| Q |
210 |
gcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaagagcgcttg |
309 |
Q |
| |
|
||||| | | |||||||| | || || || | ||||||||| |||| || || || | ||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
27409909 |
gcaaagccgctagttgtccagcaaatatcaacgctgtgtgtcccgcagaacttcaagtaaaaggttctgatgggagtgtcgttgcttgtaagagtgcttg |
27409810 |
T |
|
| Q |
310 |
tttggctttaaacgaggataaatattgttgccgtggagattacaataccgaagaaaaatgtccacc |
375 |
Q |
| |
|
|||||||| || ||| |||||||||| |||||| |||||||||||||| | ||||||||| |
|
|
| T |
27409809 |
cttggcttttaatacagatcaatattgttgtcgtggaagttacaataccgaagcgacatgtccacc |
27409744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 20952617 - 20952530
Alignment:
| Q |
232 |
gaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaagagcgcttgtttggcttta |
319 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
20952617 |
gaacattaatattgtgtgtccttaagagctccaagtgaccggttctgatgggagtgtggtggcttgtaaaagcgcttgtttggcttta |
20952530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 27454844 - 27454712
Alignment:
| Q |
22 |
gtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaaca |
121 |
Q |
| |
|
|||||| || ||||| ||||||||| ||| |||||| | || | ||| | ||| || |||||||||||||||||||||||||||||||| || || || |
|
|
| T |
27454844 |
gtttagttgggccactgccgattgtatctccggtcaaatgggttccaatgatgcaggtgcaatcccaccagcaacattggtagaaataacggttacatca |
27454745 |
T |
|
| Q |
122 |
aacgggggacaagatttctacgatgtgagcaat |
154 |
Q |
| |
|
|| || ||||||||||||| |||||||||||| |
|
|
| T |
27454744 |
gacaggagacaagatttctatgatgtgagcaat |
27454712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 20952716 - 20952648
Alignment:
| Q |
124 |
cgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccaca |
192 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| | ||||| ||| ||||||| |||||||||| |
|
|
| T |
20952716 |
cgggggacaagatttatatgatgtgagcaatgtggacaggttcaatgtgtcaatgtcaataacgccaca |
20952648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 27415950 - 27416142
Alignment:
| Q |
8 |
aacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaa |
107 |
Q |
| |
|
||||| || ||||| ||||| |||||||| | ||||||| ||||||||||| | ||||| ||||||| || ||| |||||||||||||||| || | |
|
|
| T |
27415950 |
aacaataacggaaattttagttgtgccacaggtgattgtgggtctggtcaagttgagtgcaatggtgctgacgtaattacaccagcaacattggttgaca |
27416049 |
T |
|
| Q |
108 |
taaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtggga |
200 |
Q |
| |
|
| | || ||| |||| || ||||||||||| ||| ||||||||| |||| ||||| |||||| | |||||||| |||| |||||||| |
|
|
| T |
27416050 |
ttaaagtggcatcaaatggaggacaagatttatacagtgtgagcaacacttatgggttcaatgtgccagtatctgtaactccacgaggtggga |
27416142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 41457732 - 41457895
Alignment:
| Q |
17 |
ggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtag |
116 |
Q |
| |
|
||||| ||||| || ||||| || ||||||| ||| || ||||||| ||||| ||||| || ||| | |||||||||||||| | |||| || ||||| |
|
|
| T |
41457732 |
ggaaaatttagttgcgccactgctgattgtggctccggccaagtcgcttgcaatggtgccggtgcagttccaccagcaacattagcagaactacacgtag |
41457831 |
T |
|
| Q |
117 |
caacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtc |
180 |
Q |
| |
|
| | ||||| |||||||| | ||||||| | |||||||| || || |||||||| || ||||| |
|
|
| T |
41457832 |
aagccaacggtggacaagactactacgatataagcaatgttgacgggttcaacgtacccatgtc |
41457895 |
T |
|
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