View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_low_11 (Length: 389)
Name: NF19909_low_11
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 2621487 - 2621123
Alignment:
| Q |
17 |
caaagaggttcccatacacatcatactgttcatataaacacatggactatatcagtgtcaaaactagcacaatagcaatcattaattcgttgaatcattt |
116 |
Q |
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| T |
2621487 |
caaagaggttcccatacacatcatactgttcatataaacacatggactatatcagtgtcaaaactagcacaatagcaatcattaattcgttgaatcattt |
2621388 |
T |
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| Q |
117 |
tttataatcaaagtttgattaattatattaaacagattacaagggatattcaaactacatcaagatacacaactcctataaatcatgccgagtaaccttg |
216 |
Q |
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| T |
2621387 |
tttataatcaaagtttgattaatta-----aacagattacaagggatattcaaactacatcaagatacacaactcctataaatcatgccgagtaaccttg |
2621293 |
T |
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| Q |
217 |
gaggtttaggatcaaaaagtctaaacatattggtcgttcacctcatgttccttataaactcttttagtctcactattttatccgatgtgaaacttctatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621292 |
gaggtttaggatcaaaaagtctaaacatattggtcgttcacctcatgttccttataaactcttttagtctcactattttatccgatgtgaaacttctatt |
2621193 |
T |
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| Q |
317 |
ttcaacattctccctaagtccaactgggttagtctcttcagcggtccatttctaaattgatgatgtccat |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2621192 |
ttcaacattctccctaagtccaactgggttagtctcttcagcggtccatttctaaattgatgatgaccat |
2621123 |
T |
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