View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_low_13 (Length: 367)
Name: NF19909_low_13
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 16792171 - 16791828
Alignment:
| Q |
17 |
agttatgaatatgaatggacagaaattgcctatgcctcctactactggaaggtggcataggtcagatcctaacacaatattgagagttttgtgccataga |
116 |
Q |
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| T |
16792171 |
agttatgaatatgaatggacagaaattgcctatgcctcctactactggaaggtggcatagatcagatcctaacacaatattgagagttttgtgccataga |
16792072 |
T |
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| Q |
117 |
aatgaaagagctgctaattatttcttaaagaggacattccatttagcaaagaggagatgatatacacttgcaacataaatattttttacaccgtcaatca |
216 |
Q |
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| T |
16792071 |
aatgaaagagctgctaattatttcttaaagaggacattccatttagcaaagaggagatgatatacacttgcaacataaatattttttacaccgtcaatca |
16791972 |
T |
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| Q |
217 |
aattaattatatatttgttaaaagtcatagaaatgacagtttatgattggttgacggtgtaaaaaatatttatagagacagtgtatcaaagttaatttct |
316 |
Q |
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| T |
16791971 |
aattaattatatatttgttaaaagtcatagaaatgacagtttatgattggttgacggtgtaaaaaatttttattgagacagtgtatcaaagttaatttct |
16791872 |
T |
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| Q |
317 |
ctatgcatatacatcttggagaaaatatggatgaatattcttgg |
360 |
Q |
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| T |
16791871 |
ctatgtatatacatcttggagaaaatatggatgaatattattgg |
16791828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 32735927 - 32736069
Alignment:
| Q |
30 |
aatggacagaaattgcctatgcctcctactactggaaggtggcataggtcagatcctaacacaatattgagagttttgtgccatagaaatgaaagagctg |
129 |
Q |
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| T |
32735927 |
aatggacaaaagttaccaatgcctcctactacatgcaaatggaatagagcagatcctaatacaatgttgagggttttgtgctatagaaatgatggtgctg |
32736026 |
T |
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| Q |
130 |
ctaattatttcttaaagaggacattccatttagcaaagaggag |
172 |
Q |
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| T |
32736027 |
caaatcagtttttgaagagaacatttcagttagctaagaggag |
32736069 |
T |
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