View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_low_14 (Length: 364)
Name: NF19909_low_14
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 41323943 - 41323769
Alignment:
| Q |
4 |
atgtccaagaatatacatgagctaggtttggaggctttttggcatttctcatttacatgatcacaactttcaccctctacgttcctgattggagtttcgt |
103 |
Q |
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| T |
41323943 |
atgtacaataatatacatgagctaggtttggaggctttttggcatttctcatttacatgatcacaactttcaccctctacgttcctgattggagtttcgt |
41323844 |
T |
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| Q |
104 |
agatcatactaacggtgatgaaccaaaaagatacacggtatattcactctctaatgtctaaattgttcgttgaag |
178 |
Q |
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| T |
41323843 |
agatcatactaacggtgacgaaccaaaaagatacacggtatattcactctccaatgtctaaattgttagttgaag |
41323769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 220 - 346
Target Start/End: Complemental strand, 41323727 - 41323601
Alignment:
| Q |
220 |
ggtgatatgtgggatgagaggacacagaggccctgcatgtaacgctgttggatatgtcgataggcaagtttggggggttaaccacttttatatacatcct |
319 |
Q |
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| T |
41323727 |
ggtgatatgtgggatgagaggacacagaggccctgcatgtaacgctgttggatatgtcgataggcaagtttggggggttaaccacttttatatacatcct |
41323628 |
T |
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| Q |
320 |
gtttggagacacttgaaggtaactagt |
346 |
Q |
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| T |
41323627 |
gtttggagacacttgaaggtaactagt |
41323601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 41309303 - 41309186
Alignment:
| Q |
26 |
taggtttggaggctttttggcatttctcatttacatgatcacaactttcaccctctacgttcctgattggagtttcgtagatcatactaacggtgatgaa |
125 |
Q |
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| T |
41309303 |
taggtttggaggcttcatggcatttctcatttacatgatcacaacctttgctttgtatgttcctaattggagttttgtagatcatgttaacaatgatgaa |
41309204 |
T |
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| Q |
126 |
ccaaaaagatacacggta |
143 |
Q |
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| T |
41309203 |
ccaaagagatacacggta |
41309186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 329
Target Start/End: Complemental strand, 41309104 - 41308995
Alignment:
| Q |
220 |
ggtgatatgtgggatgagaggacacagaggccctgcatgtaacgctgttggatatgtcgataggcaagtttggggggttaaccacttttatatacatcct |
319 |
Q |
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||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||| ||| |||||||||||| || ||||| || ||| |
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| T |
41309104 |
ggtgatatgtgggatgagagggcaccttggtcctgcatgtaacgctgttggatatgttgatagacaaacttggggggttaatcatctttattctcaacct |
41309005 |
T |
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| Q |
320 |
gtttggagac |
329 |
Q |
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| T |
41309004 |
gtttggagac |
41308995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 27657940 - 27658015
Alignment:
| Q |
225 |
tatgtgggatgagaggacacagaggccctgcatgtaacgctgttggatatgtcgataggcaagtttggggggttaa |
300 |
Q |
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| T |
27657940 |
tatgtgggattagaggacacttaggtcctgcatgtaacgctgttgggtatgtggatagacaaatgtggggggttaa |
27658015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 27657748 - 27657822
Alignment:
| Q |
26 |
taggtttggaggctttttggcatttctcatttacatgatcacaactttcaccctctacgttcctgattggagttt |
100 |
Q |
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|||| ||||||| ||| |||||||| | ||||||||| |||| ||||||| |||||||||||| ||||||||||| |
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| T |
27657748 |
taggcttggagggtttgtggcatttgttatttacatggtcactactttcagcctctacgttccagattggagttt |
27657822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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