View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_low_18 (Length: 354)
Name: NF19909_low_18
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 6 - 339
Target Start/End: Original strand, 17105522 - 17105855
Alignment:
| Q |
6 |
agcagcagagattggtgggaaacagtatttcaacatatcagttttgacaaggactgctgatggcgatgaaggtggaaagcaccagctgattacagcaact |
105 |
Q |
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| T |
17105522 |
agcaccagtgattggtgggaaacagtatttcaacatatcagttttgacaaggactgctgatggcgatgaaggtggaaagcaccagctgattacagcaact |
17105621 |
T |
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| Q |
106 |
gtaaatgatggaaagctatacatttgcaaggctcaagctggagacaagaggtggtttaagggagcaagaaagtttgttgaggacactgcaagttctttca |
205 |
Q |
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| T |
17105622 |
gtaaatgatggaaaactatacatttgcaaggctcaagctggagacaagaggtggtttaagggagcaagaaagtttgttgaggacactgcaagttctttca |
17105721 |
T |
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| Q |
206 |
gtgttgcctaaattaagaactttggtcaagggttgttattttgcatgtaaatcttattcttaagtaagcacttggagttttaatcataatggctttttta |
305 |
Q |
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| T |
17105722 |
gtgttgcctaaattaagaactttggtcaagggttgttattttgcatgtaaatcttattcttaagtaagcacttggagttttaatcataatggctttttaa |
17105821 |
T |
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| Q |
306 |
acatgctctctaattaagaattttaagctgttac |
339 |
Q |
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| T |
17105822 |
acatgctctctaattaagaattttaagctgttac |
17105855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 49 - 212
Target Start/End: Original strand, 39370688 - 39370851
Alignment:
| Q |
49 |
ttgacaaggactgctgatggcgatgaaggtggaaagcaccagctgattacagcaactgtaaatgatggaaagctatacatttgcaaggctcaagctggag |
148 |
Q |
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| T |
39370688 |
ttgacaagaactgctgatggagatgaaggtggcaagcatcagataattagagcaactgtgaaagatggaaaattatacatttgcaaagctcaagctggag |
39370787 |
T |
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| Q |
149 |
acaagaggtggtttaagggagcaagaaagtttgttgaggacactgcaagttctttcagtgttgc |
212 |
Q |
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| T |
39370788 |
acaagaggtggtttaaaggagcaagaagatttgtggagagtacagcaaattctttcagtgttgc |
39370851 |
T |
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