View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19909_low_2 (Length: 690)

Name: NF19909_low_2
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19909_low_2
NF19909_low_2
[»] chr2 (1 HSPs)
chr2 (1-674)||(7544104-7544777)


Alignment Details
Target: chr2 (Bit Score: 662; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Complemental strand, 7544777 - 7544104
Alignment:
Q  1 gaatacgttcataaaataatatggtttcaatggaaccatgcagaaactccttcataataggttggttacgaacattaaaagtaacattcttgtcggattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7544777 gaatacgttcataaaataatatggtttcaatggaaccatgcagaaactccttcataataggttggttacgaacattaaaagtaacattcttgtcggattt 7544678  T
Q  101 cttggacaaattagttttaaagaattgatatacgtcaaggaaagttaagttaccaacatgagtcggtcatccggggaattcatcatcaatcaagatgaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7544677 cttggacaaattagttttaaagaattgatatacgtcaaggaaagttaagttaccaacatgagtcggtcatccggggaattcatcatcaatcaagatgaaa 7544578  T
Q  201 gaagcacaggaatagaagtgacatcaactaaaacctcatccatccgtcgaatcatataagtggagtttcgaaggtgccattttagcttatagtacttctt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  7544577 gaagcacaggaatagaagtgacatcaactaaaacctcatccatccgtcgaatcatataagtggagtttcgaaggtgccattttaacttaaagtacttctt 7544478  T
Q  301 aaaggcgtgtatctcagaaatatgctcacatatgtatttacttgaagattttgcactttgcgcaaaagaagtgttaatcttggctaatcagttgtccaag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7544477 aaaggcgtgtatctcagaaatatgctcacatatgtatttacttgaagattttgcactttgcgcaaaagaagtgttaatcttggctaatcagttgtccaag 7544378  T
Q  401 tctaaattataagaagagtaaaattctctccacaaagtcggtaaacattttgacagtttccagcaacttaatgtttcttttctgaatcctaataaagagt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7544377 tctaaattataagaagagtaaaattctctccacaaagtcggtaaacattttgacagtttccagcaacttaatgtttcttttctgaatcctaataaagagt 7544278  T
Q  501 tgcgaagaagaggcctctggtcaagccgccaaatcttctagatcatgagaaaacagatagtgaatggcgtgacaaaggcacatatgatgagtcacggtgt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7544277 tgcgaagaagaggcctctggtcaagccgccaaatcttctagatcatgagaaaacagatagtgaatggcgtgacaaaggcacatatgatgagtcacggtgt 7544178  T
Q  601 ttggaaggtaaacaaggtgaaacctttcctcgtatcaggataattggccaataaaaattgccgacataagaaat 674  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7544177 ttggaaggtaaacaaggtgaaacctttcctcgtatcaggataattggtcaataaaaattgccgacataagaaat 7544104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University