View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19909_low_21 (Length: 344)

Name: NF19909_low_21
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19909_low_21
NF19909_low_21
[»] chr3 (2 HSPs)
chr3 (19-333)||(20596903-20597218)
chr3 (228-326)||(3814478-3814576)
[»] chr6 (2 HSPs)
chr6 (19-333)||(8697904-8698217)
chr6 (228-333)||(11385783-11385888)
[»] chr4 (4 HSPs)
chr4 (228-322)||(37102307-37102401)
chr4 (19-163)||(20623068-20623211)
chr4 (228-311)||(20622912-20622995)
chr4 (77-141)||(37102156-37102220)
[»] chr5 (4 HSPs)
chr5 (223-315)||(24505974-24506066)
chr5 (228-333)||(21793446-21793551)
chr5 (228-311)||(23331295-23331378)
chr5 (74-163)||(23331451-23331540)
[»] chr8 (2 HSPs)
chr8 (228-326)||(23705951-23706049)
chr8 (77-147)||(23705794-23705864)
[»] chr2 (1 HSPs)
chr2 (228-268)||(42732954-42732994)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 20597218 - 20596903
Alignment:
Q  19 gcttttgctgccctccacatcaactcctttaactttttcccaggatgnnnnnnnnctaaagttattgtacagatgcctgacacaaaacctttgatcaaca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  20597218 gcttttgctgccctccacatcaactcctttaactttttcccaggatgttttttc-ctaaagttattgtacagatgcctgacacaaaacctttgatcaaca 20597120  T
Q  119 tcaggtagtaactcatccatagccggcaaaagaccctgcaatgtaattgtgattgttaaataaacagnnnnnnn--gtctaacatttaaaaagacaataa 216  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||         ||||||||  ||||||||||||||    
T  20597119 tcaggtagtaactcatccatagtcggcaaaagaccctgcaatgtaattgtgattgttaaataaacaggaaaaaaaagtctaacaagtaaaaagacaataa 20597020  T
Q  217 tgaagtaaaactaccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttct 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||     
T  20597019 tgaagtaaaactaccttttgttggtcactaataaaagtgtaagtcttacatagtcttggtccacctaaatcagcaattagtagctccaagaaccaattcc 20596920  T
Q  317 aagattccttggtctct 333  Q
    |||||||||||||||||    
T  20596919 aagattccttggtctct 20596903  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 326
Target Start/End: Original strand, 3814478 - 3814576
Alignment:
Q  228 taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattcctt 326  Q
    |||||||||||| |||||||| || ||||||||||| || | ||| ||||||||||| ||| |||| |  || ||||| ||||||||| | ||||||||    
T  3814478 taccttttgttgatcactaatgaaggtgtaagtcttgcataatctgggtccacctaagtcaccaatcaagagttccaaaaaccacttccatgattcctt 3814576  T

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Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 8698217 - 8697904
Alignment:
Q  19 gcttttgctgccctccacatcaactcctttaactttttcccaggatgnnnnnnnnctaaagttattgtacagatgcctgacacaaaacctttgatcaaca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| |||||||||||||||||||||    
T  8698217 gcttttgctgccctccacatcaactcctttaactttttcccaggatgttttttc-ctaaagttattgtacagatgccttacacaaaacctttgatcaaca 8698119  T
Q  119 tcaggtagtaactcatccatagccggcaaaagaccctgcaatgtaattgtgattgttaaataaacagnnnnnnngtctaacatttaaaaagacaataatg 218  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||       ||||||||| ||||||||||||||||    
T  8698118 tcaggcagtaactcatccatagctggcaaaagaccctgcaatgtaattgtgattgttaattaaacagaaaaaaagtctaacatgtaaaaagacaataatg 8698019  T
Q  219 aagtaaaactaccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaa 318  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  8698018 aagtaaaactaccttttgctggtcactaataaaagtgtaagtcttacacaatcttggtccacctaaatcaccaattagaagctccaagaaccacttccaa 8697919  T
Q  319 gattccttggtctct 333  Q
    ||||| |||||||||    
T  8697918 gattctttggtctct 8697904  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 11385888 - 11385783
Alignment:
Q  228 taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg 327  Q
    ||||||||| ||||||||||| | ||||||||| || || |||||||  ||||| ||||||||||| |||| |||||  |||||| || | ||||| |||    
T  11385888 taccttttgctggtcactaattatagtgtaagtattgcaaagtcttgtgccacccaaatcagcaatgagaatctccagaaaccacatccatgattctttg 11385789  T
Q  328 gtctct 333  Q
     |||||    
T  11385788 ttctct 11385783  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 37102307 - 37102401
Alignment:
Q  228 taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagatt 322  Q
    ||||||||||||||||||||||||||||||||||   |||| ||  ||||||||||| |||||||| ||  ||||||| ||||| ||| ||||||    
T  37102307 taccttttgttggtcactaataaaagtgtaagtcaagcacaatccaggtccacctaagtcagcaatgagctgctccaaaaaccatttccaagatt 37102401  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 20623211 - 20623068
Alignment:
Q  19 gcttttgctgccctccacatcaactcctttaactttttcccaggatgnnnnnnnnctaaagttattgtacagatgcctgacacaaaacctttgatcaaca 118  Q
    |||||||||||| |||||||||| ||||| ||||| || |||||||         |||||||| ||||| |||||||| ||||| || ||||| |||||     
T  20623211 gcttttgctgccttccacatcaattccttcaacttctttccaggat-atttcttcctaaagttgttgtaaagatgcctcacacataatctttggtcaact 20623113  T
Q  119 tcaggtagtaactcatccatagccggcaaaagaccctgcaatgta 163  Q
     |||| ||||  ||||||||||| || ||||| |||| |||||||    
T  20623112 ccaggaagtagttcatccatagctggtaaaagtccctacaatgta 20623068  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 20622995 - 20622912
Alignment:
Q  228 taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaacca 311  Q
    |||||||||||| ||||| |||||||||||||||   |||| ||| || ||||||| ||||||||| || || ||||| |||||    
T  20622995 taccttttgttgatcacttataaaagtgtaagtcaagcacaatctaggaccacctagatcagcaatgagtagttccaaaaacca 20622912  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 37102156 - 37102220
Alignment:
Q  77 aagttattgtacagatgcctgacacaaaacctttgatcaacatcaggtagtaactcatccatagc 141  Q
    ||||| ||||| |||||||| ||||||||  ||||||| ||  |||| |||||||||||||||||    
T  37102156 aagttgttgtaaagatgcctcacacaaaatatttgatccactccaggaagtaactcatccatagc 37102220  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 24506066 - 24505974
Alignment:
Q  223 aaaactaccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttc 315  Q
    |||| |||||||||||| ||||||||||| ||||| ||||| ||||  ||   ||||||||| |||||||| ||||||||||| |||||||||    
T  24506066 aaaattaccttttgttgatcactaataaaggtgtatgtcttgcacaacctgcttccacctaagtcagcaatcagaagctccaaaaaccacttc 24505974  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 333
Target Start/End: Original strand, 21793446 - 21793551
Alignment:
Q  228 taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg 327  Q
    ||||||||| ||||||||||| | ||||||||| || || |||||||  ||||| ||||||||||| ||||||||||  |||||| || | ||||| |||    
T  21793446 taccttttgctggtcactaattatagtgtaagtattgcaaagtcttgtgccacccaaatcagcaatgagaagctccagaaaccacatccatgattctttg 21793545  T
Q  328 gtctct 333  Q
     |||||    
T  21793546 ttctct 21793551  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 23331378 - 23331295
Alignment:
Q  228 taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaacca 311  Q
    |||||||||||| ||||| |||||||||||||||   |||| |||  | ||||||||||||||||| || |||||||| |||||    
T  23331378 taccttttgttgatcacttataaaagtgtaagtcaagcacaatctatgaccacctaaatcagcaataagtagctccaaaaacca 23331295  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 23331540 - 23331451
Alignment:
Q  74 ctaaagttattgtacagatgcctgacacaaaacctttgatcaacatcaggtagtaactcatccatagccggcaaaagaccctgcaatgta 163  Q
    |||||||| ||||| |||||||| ||||| || ||||| |||||  |||| ||||  ||||||||||| || ||||| |||| |||||||    
T  23331540 ctaaagttgttgtaaagatgcctcacacagaatctttggtcaactccaggaagtagttcatccatagctggtaaaagtccctacaatgta 23331451  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 326
Target Start/End: Original strand, 23705951 - 23706049
Alignment:
Q  228 taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattcctt 326  Q
    |||||||||||| ||||||||||| ||||||||||| || | ||| | ||||||||| ||| |||| || || ||||| ||||||||| | ||||||||    
T  23705951 taccttttgttgatcactaataaatgtgtaagtcttgcataatctagttccacctaagtcaccaatcaggagttccaaaaaccacttccatgattcctt 23706049  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 23705794 - 23705864
Alignment:
Q  77 aagttattgtacagatgcctgacacaaaacctttgatcaacatcaggtagtaactcatccatagccggcaa 147  Q
    ||||||||||| || || ||||||||||| ||||| || ||||| |||||||  ||||||||||| |||||    
T  23705794 aagttattgtaaaggtgtctgacacaaaatctttgttctacatccggtagtagttcatccatagcaggcaa 23705864  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 42732954 - 42732994
Alignment:
Q  228 taccttttgttggtcactaataaaagtgtaagtcttacaca 268  Q
    |||||||||||| ||||| ||||||||||| ||||||||||    
T  42732954 taccttttgttgatcacttataaaagtgtatgtcttacaca 42732994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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