View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19909_low_25 (Length: 305)

Name: NF19909_low_25
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19909_low_25
NF19909_low_25
[»] chr5 (7 HSPs)
chr5 (14-295)||(9211179-9211461)
chr5 (14-118)||(9370024-9370129)
chr5 (14-111)||(12560196-12560295)
chr5 (22-102)||(19242377-19242458)
chr5 (14-77)||(12556953-12557016)
chr5 (59-102)||(35182103-35182147)
chr5 (59-102)||(38783926-38783970)
[»] chr7 (3 HSPs)
chr7 (14-102)||(19538756-19538845)
chr7 (14-102)||(19545407-19545496)
chr7 (35-100)||(47228609-47228675)
[»] chr1 (3 HSPs)
chr1 (22-116)||(35923303-35923398)
chr1 (35-102)||(1466853-1466921)
chr1 (59-102)||(5050502-5050546)
[»] chr3 (7 HSPs)
chr3 (14-102)||(9450759-9450848)
chr3 (25-106)||(20798753-20798834)
chr3 (35-102)||(17724629-17724697)
chr3 (35-102)||(19025858-19025926)
chr3 (35-118)||(28830403-28830487)
chr3 (35-102)||(28838384-28838452)
chr3 (22-102)||(26640783-26640864)
[»] chr2 (2 HSPs)
chr2 (34-102)||(7959616-7959685)
chr2 (24-98)||(43923968-43924042)
[»] chr8 (3 HSPs)
chr8 (22-77)||(3427908-3427963)
chr8 (59-103)||(9939758-9939803)
chr8 (59-118)||(9937386-9937446)
[»] chr4 (1 HSPs)
chr4 (56-102)||(44089784-44089831)


Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 9211461 - 9211179
Alignment:
Q  14 cactttgaaggggtgctagcttaaggtctacctaagtggtggagtctacatcataatttgttgctgtggggtc-tgcgttcgcgcggcccttcccaatta 112  Q
    |||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| |||||||||    
T  9211461 cactttgaagaggtgctagcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccctcccaatta 9211362  T
Q  113 tagttttaaactttgagaaattattattttgtaccgttgtcttcaagtgtggcaatcttttattttattgcagcgaagttttcttgtttcttttccatta 212  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9211361 tagttttaaagtttgagaaattattattttgtaccgttgtcttcaagtgtggcaatcttttattttattgcagcgaagttttcttgcttcttttccatta 9211262  T
Q  213 caatgttagtgatgcaaactgacttcatacggtagttcattaaaatggttgaatattttaacatccatttttcttcaattcat 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9211261 caatgttagtgatgcaaactgacttcatacggtagttcattaaaatggttgaatattttaacatccatttttcttcaattcat 9211179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 9370024 - 9370129
Alignment:
Q  14 cactttgaaggggtgctagcttaaggtctacctaagtggtggagtctacatcataatttgttgctg-tggggtctgcgttcgcgcggcccttcccaatta 112  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||  | |||||  |||||||||||||||| ||||||||     
T  9370024 cactttgaaggggtgctagcctaaggtctacccaagtggtggagcctacatcataatatgttgtggttggggcttgcgttcgcgcggcccctcccaattt 9370123  T
Q  113 tagttt 118  Q
    ||||||    
T  9370124 tagttt 9370129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 12560196 - 12560295
Alignment:
Q  14 cactttgaaggggtgctagcttaaggtctacct-aagtggtggagtctacatcataatttgttgctgt-ggggtctgcgttcgcgcggcccttcccaatt 111  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||| ||||||||||||||||||| || ||||| ||||||||||| |||| | ||||||    
T  12560196 cactttggaggggtgctagcctaaggtctaccccaagtggtggagcctacatcataatttgttgccgtgggggtttgcgttcgcgcagccccttccaatt 12560295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 19242458 - 19242377
Alignment:
Q  22 aggggtgctagcttaaggtctacctaagtggtggagtctacatcataatttgttgctg-tggggtctgcgttcgcgcggccc 102  Q
    |||||||||||  ||||||||||| ||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||||    
T  19242458 aggggtgctagtctaaggtctacccaagtggtggagcctacatcataatttgttgcagcgggggcctgcgttcgcgcggccc 19242377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 12556953 - 12557016
Alignment:
Q  14 cactttgaaggggtgctagcttaaggtctacctaagtggtggagtctacatcataatttgttgc 77  Q
    ||||||| ||||||||| || ||||||||||  ||||||||||| |||||||||||||||||||    
T  12556953 cactttggaggggtgctggcctaaggtctactcaagtggtggagcctacatcataatttgttgc 12557016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 35182103 - 35182147
Alignment:
Q  59 ctacatcataatttgttgctgt-ggggtctgcgttcgcgcggccc 102  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  35182103 ctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 35182147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 38783926 - 38783970
Alignment:
Q  59 ctacatcataatttgttgctgt-ggggtctgcgttcgcgcggccc 102  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  38783926 ctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 38783970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 19538845 - 19538756
Alignment:
Q  14 cactttgaaggggtgctagcttaaggtctacctaagtggtggagtctacatcataatttgttgctgt-ggggtctgcgttcgcgcggccc 102  Q
    ||||||| |||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  19538845 cactttggaggggtgctatcctaaggtctacctaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 19538756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 19545496 - 19545407
Alignment:
Q  14 cactttgaaggggtgctagcttaaggtctacctaagtggtggagtctacatcataatttgttgctgt-ggggtctgcgttcgcgcggccc 102  Q
    ||||||| |||||||||    ||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  19545496 cactttggaggggtgctcttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 19545407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 47228609 - 47228675
Alignment:
Q  35 taaggtctacctaagtggtggagtctacatcataatttgttgctg-tggggtctgcgttcgcgcggc 100  Q
    ||||||||| | ||||||||||| |||||| ||||||||||||||  ||||||||||||||||||||    
T  47228609 taaggtctatccaagtggtggagcctacattataatttgttgctgagggggtctgcgttcgcgcggc 47228675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 35923303 - 35923398
Alignment:
Q  22 aggggtgctagcttaaggtctacctaagtggtggagtctacatcataatttgttgctgt-ggggtctgcgttcgcgcggcccttcccaattatagt 116  Q
    ||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| | |||||| ||||    
T  35923303 aggggtgcttgcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccttccaattttagt 35923398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 1466853 - 1466921
Alignment:
Q  35 taaggtctacctaagtggtggagtctacatcataatttgttgctgt-ggggtctgcgttcgcgcggccc 102  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  1466853 taaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 1466921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 5050546 - 5050502
Alignment:
Q  59 ctacatcataatttgttgctgt-ggggtctgcgttcgcgcggccc 102  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  5050546 ctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 5050502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 9450759 - 9450848
Alignment:
Q  14 cactttgaaggggtgctagcttaaggtctacctaagtggtggagtctacatcataatttgttgctgt-ggggtctgcgttcgcgcggccc 102  Q
    ||||||| ||||||||   | ||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  9450759 cactttggaggggtgccttcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 9450848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 20798834 - 20798753
Alignment:
Q  25 ggtgctagcttaaggtctacctaagtggtggagtctacatcataatttgttgctgtggggtctgcgttcgcgcggcccttcc 106  Q
    ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| | ||||  ||||||||||| ||||||||    
T  20798834 ggtgctagcctaaggtctacccaagtggtggagcctacatcataatttgttgcagcggggcttgcgttcgcgcagcccttcc 20798753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 17724629 - 17724697
Alignment:
Q  35 taaggtctacctaagtggtggagtctacatcataatttgttgctgt-ggggtctgcgttcgcgcggccc 102  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  17724629 taaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 17724697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 19025858 - 19025926
Alignment:
Q  35 taaggtctacctaagtggtggagtctacatcataatttgttgctgt-ggggtctgcgttcgcgcggccc 102  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  19025858 taaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 19025926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 28830487 - 28830403
Alignment:
Q  35 taaggtctacctaagtggtggagtctacatcataatttgttgctgt-ggggtctgcgttcgcgcggcccttcccaattatagttt 118  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||||| | |||||| ||||||    
T  28830487 taaggtctacccaagtggtggagcctacatcataatttgttgttgtgggggcctgcgttcgcgcggccccttccaattttagttt 28830403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 28838452 - 28838384
Alignment:
Q  35 taaggtctacctaagtggtggagtctacatcataatttgttgctgt-ggggtctgcgttcgcgcggccc 102  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  28838452 taaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 28838384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 26640783 - 26640864
Alignment:
Q  22 aggggtgctagcttaaggtctacctaagtggtggagtctacatcataatttgttgctgt-ggggtctgcgttcgcgcggccc 102  Q
    |||||||||||  ||||||||||| ||||||||||  ||||||||||||||||||| || |||| |||||||||||||||||    
T  26640783 aggggtgctagtctaaggtctacccaagtggtggaacctacatcataatttgttgcagtgggggcctgcgttcgcgcggccc 26640864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 7959685 - 7959616
Alignment:
Q  34 ttaaggtctacctaagtggtggagtctacatcataatttgttgctgt-ggggtctgcgttcgcgcggccc 102  Q
    |||||||||| | || |||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  7959685 ttaaggtctatccaaatggtggagcctacatcataatttgttgctgtgggggtctgcgttcgcgcggccc 7959616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 43924042 - 43923968
Alignment:
Q  24 gggtgctagcttaaggtctacctaagtggtggagtctacatcataatttgttgctgtggggtctgcgttcgcgcg 98  Q
    |||| |||| |||||||||||  ||||||||||| |||||| |||||||||| | || |||| ||||||||||||    
T  43924042 gggttctagtttaaggtctactcaagtggtggagcctacattataatttgttccagtagggtttgcgttcgcgcg 43923968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 3427963 - 3427908
Alignment:
Q  22 aggggtgctagcttaaggtctacctaagtggtggagtctacatcataatttgttgc 77  Q
    ||||||||||||||||||||| || |||||||||||| |||||| |||||||||||    
T  3427963 aggggtgctagcttaaggtctgcccaagtggtggagtttacatcgtaatttgttgc 3427908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 9939758 - 9939803
Alignment:
Q  59 ctacatcataatttgttgctgt-ggggtctgcgttcgcgcggccct 103  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||    
T  9939758 ctacatcataatttgttgctgtgggggcctgcgttcgcgcggccct 9939803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 9937386 - 9937446
Alignment:
Q  59 ctacatcataatttgttgctgt-ggggtctgcgttcgcgcggcccttcccaattatagttt 118  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||| | ||||| |||||||    
T  9937386 ctacatcatagtttgttgctgtgggggcctgcgttcgcgcggccccttccaataatagttt 9937446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 44089784 - 44089831
Alignment:
Q  56 agtctacatcataatttgttgctg-tggggtctgcgttcgcgcggccc 102  Q
    ||||||||||||||||||||||||  |||| |||||||||||||||||    
T  44089784 agtctacatcataatttgttgctgagggggcctgcgttcgcgcggccc 44089831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University