View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19909_low_26 (Length: 288)
Name: NF19909_low_26
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 55130568 - 55130828
Alignment:
| Q |
18 |
ctttagctttcattaacctaaatagaacttcttctgcagaagctaattcctttttcttcttcatctcctgctttggctgttgattactactattaatatt |
117 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
55130568 |
ctttggctttcattagcctaaatagaacttcttctgcagaagctaattcctttttcttcttcatctgctgctttggctgttgattactactattaatatt |
55130667 |
T |
|
| Q |
118 |
attctgttgtatcgctcccaataattcagcgagttcgctctttgaaatcttcaacgtcaccttcccacttgcatcacaagaagctctaagctttcctaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55130668 |
attctgttgtatcgctcccaataattcagcgagttcgctctttgaaatcttcaacgtcaccttcccacttgcatcacaagaagctctaagctttcctaat |
55130767 |
T |
|
| Q |
218 |
acatcattctccttctggtgatgatcaagactagcttcatcaaacaccttgcttgatgatg |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55130768 |
acatcattctccttctggtgatgatcaagactagcttcatcaaacaccttgcttgatgatg |
55130828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 131 - 278
Target Start/End: Original strand, 55125868 - 55126015
Alignment:
| Q |
131 |
gctcccaataattcagcgagttcgctctttgaaatcttcaacgtcaccttcccacttgcatcacaagaagctctaagctttcctaatacatcattctcct |
230 |
Q |
| |
|
||||||||||||||||| || || |||||||||||| || || ||||||||||||||||| | ||||||||||||| || |||||| ||||||||| | |
|
|
| T |
55125868 |
gctcccaataattcagccagctctgactttgaaatctttaatgttaccttcccacttgcatctccagaagctctaagcctttctaatagatcattctctt |
55125967 |
T |
|
| Q |
231 |
tctggtgatgatcaagactagcttcatcaaacaccttgcttgatgatg |
278 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
55125968 |
tctgaggatgatcaagatgagcttcatcaaacaccttacttgatgatg |
55126015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University