View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_low_28 (Length: 275)
Name: NF19909_low_28
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 923931 - 924172
Alignment:
| Q |
19 |
gtggcaacccctttaccccaatatttagagcctagaacatagccaagttctgcacatttgttcctggatttatcaccaggtgaactcgaggatagagaaa |
118 |
Q |
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| T |
923931 |
gtggcaacccctttaccccaatatttagagcctagaacatagccaagttctgcacatttgttcctggatttatcaccaggtgaactcgaggatagagaaa |
924030 |
T |
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| Q |
119 |
cacacccaattgcacgatcattgatgcatattgctttgcaccatagaaacttgggagcaatattttcaatgaagttgatgccatcatccttgctggtgta |
218 |
Q |
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| T |
924031 |
cacacccaattgcacgatcattgatgcatattgctttgcaccatagaaacttggtagcaatattttcaatgaagttgatgccatcatccttgctggtgta |
924130 |
T |
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| Q |
219 |
gagttcccaagagcagaacttggccactttttcatcagttgt |
260 |
Q |
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| T |
924131 |
gagttcccaagagcagaacttggccactttttcatcagttgt |
924172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 258
Target Start/End: Original strand, 939220 - 939450
Alignment:
| Q |
28 |
cctttaccccaatatttagagcctagaacatagccaagttctgcacatttgttcctggatttatcaccaggtgaactcgaggatagagaaacacacccaa |
127 |
Q |
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| T |
939220 |
cctttaccccagtatttagaggctagaacataggcaagttctgcagttttgttcctgcttttatcatgaggtgatcttgatttcagagaaacacggccaa |
939319 |
T |
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| Q |
128 |
ttgcacgatcattgatgcatattgctttgcaccatagaaacttgggagcaatattttcaatgaagttgatgccatcatccttgctggtgtagagttccca |
227 |
Q |
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| T |
939320 |
tagcacgattgttaaggcatattgctttgcaccatagaaacttgtttggtatattttcaatgaagctgatgccttgttctttgctggtgtatggttccca |
939419 |
T |
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| Q |
228 |
agagcagaacttggccactttttcatcagtt |
258 |
Q |
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| T |
939420 |
agagcagaacttggccactttttcatcagtt |
939450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 928300 - 928524
Alignment:
| Q |
27 |
ccctttaccccaatatttagagcctagaacatagccaagttctgcacatttgttcctggatttatcaccaggtgaactcgaggatagagaaacacaccca |
126 |
Q |
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| T |
928300 |
ccctttaccccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggtgt------gaacaaaagaacacagcca |
928393 |
T |
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| Q |
127 |
attgcacgatcattgatgcatattgctttgcaccatagaaacttgggagcaatattttcaatgaagttgatgccatcatccttgctggtgtagagttccc |
226 |
Q |
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| T |
928394 |
atagcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttccc |
928493 |
T |
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| Q |
227 |
aagagcagaacttggccactttttcatcagt |
257 |
Q |
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| T |
928494 |
aagagcagaacttggccaccttttcatcagt |
928524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 935422 - 935657
Alignment:
| Q |
19 |
gtggcaacccctttaccccaatatttagagcctagaacatagccaagttctgcacatttgttcctggatttatcaccaggtgaactcgaggatagagaaa |
118 |
Q |
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||||||| |||||||||||||||||||||| |||||||||| |||| |||||||||| ||||||| || ||| | ||||||| ||||| | || |
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| T |
935422 |
gtggcaatccctttaccccaatatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaa |
935521 |
T |
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| Q |
119 |
cacacccaattgcacgatcattgatgcatattgctttgcaccatagaaacttgggagcaatattttcaatgaagttgatgccatcatccttgctggtgta |
218 |
Q |
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| T |
935522 |
tacacccaatagcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgta |
935621 |
T |
|
| Q |
219 |
gagttcccaagagcagaacttggccactttttcatcagt |
257 |
Q |
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| T |
935622 |
aggttccc---cccagaacttggccactttttcatcagt |
935657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 925963 - 926055
Alignment:
| Q |
16 |
cacgtggcaacccctttaccccaatatttagagcctagaacatagccaagttctgcacatttgttcctggatttatcaccaggtgaactcgag |
108 |
Q |
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| T |
925963 |
cacgtggcaatccctttaccccagtatttagaggctagaacataaccaatttctgcacatttgtacctgctcttatcatgaagtgaactcgag |
926055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 940251 - 940309
Alignment:
| Q |
27 |
ccctttac-cccaatatttagagcctagaacatagccaagttctgcacatttgttcctg |
84 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
940251 |
ccctttacacccaatatttatagcctagaacatagccaagttctacacatttgttcctg |
940309 |
T |
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