View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_low_30 (Length: 273)
Name: NF19909_low_30
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 29427492 - 29427236
Alignment:
| Q |
1 |
tctataatttaacacaccatggtaaattacgtttgaaatttcatctttttctttttcacctgatttcttcaaaccatgaaaattaccatctggtaaatct |
100 |
Q |
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| T |
29427492 |
tctataatttaacacaccatggtaaattacttttgaaatttcatctttttctttttcacctgatttcttcaaaccatgaaaattaccatctggtaaatct |
29427393 |
T |
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| Q |
101 |
tgaccaaatattaaaattgaaaatgctgttaaagattgcaaaaatgcagggatgaaaaatgcaattctccatgcagtgaattttgttgaaccaaaatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29427392 |
tgaccaaatattaaaattgaaaatgctgttaaagattgcaaaaatgcaggaatgaaaaatgcaattctccatgcagtgaattttgttgaaccaaaatctt |
29427293 |
T |
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| Q |
201 |
gtataagtgaaaacacaagtggcatgatgagttgtgttgctcctccaccaaggttac |
257 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29427292 |
gtataagagaaaacacaagtggcatgatgagttgtgttgctcctccaccaaggttac |
29427236 |
T |
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