View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19909_low_35 (Length: 241)

Name: NF19909_low_35
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19909_low_35
NF19909_low_35
[»] chr6 (1 HSPs)
chr6 (124-213)||(30447283-30447372)
[»] chr2 (1 HSPs)
chr2 (144-211)||(5772775-5772842)
[»] chr5 (1 HSPs)
chr5 (124-215)||(17207194-17207286)
[»] chr3 (2 HSPs)
chr3 (124-215)||(21029672-21029763)
chr3 (127-215)||(7835785-7835872)
[»] chr7 (1 HSPs)
chr7 (130-215)||(26423955-26424041)


Alignment Details
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 30447372 - 30447283
Alignment:
Q  124 tgtaagacccgtaattttgaaaataaataaatattaataatatcatattatgctcccacatttatttttatttatgatcaaataaaaata 213  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||  | ||||||||||||||||||||||||||||    
T  30447372 tgtaagacccgtaattttgaaaataaataaatattcataatatgatattatgttcccaattctatttttatttatgatcaaataaaaata 30447283  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 5772775 - 5772842
Alignment:
Q  144 aaataaataaatattaataatatcatattatgctcccacatttatttttatttatgatcaaataaaaa 211  Q
    |||||||||||||||||| ||||  |||||||||| ||||||||||||||||||||||||||||||||    
T  5772775 aaataaataaatattaattatatagtattatgctcgcacatttatttttatttatgatcaaataaaaa 5772842  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 17207194 - 17207286
Alignment:
Q  124 tgtaagacccgtaattttgaaaa-taaataaatattaataatatcatattatgctcccacatttatttttatttatgatcaaataaaaataaa 215  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||| |||  || |||| ||||||||||    
T  17207194 tgtaagacccgtaattttgaaaaataaataaatattaataatataatattatgttcccatatctattttaattgttgttcaactaaaaataaa 17207286  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 21029672 - 21029763
Alignment:
Q  124 tgtaagacccgtaattttgaaaataaataaatattaataatatcatattatgctcccacatttatttttatttatgatcaaataaaaataaa 215  Q
    |||||||||| ||||||||||||||||||||||| || ||||| |||||||| | |  | | |||||| | |||||||||||| ||||||||    
T  21029672 tgtaagacccataattttgaaaataaataaatatcaagaatataatattatgttacttcgtctattttaaattatgatcaaattaaaataaa 21029763  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 7835872 - 7835785
Alignment:
Q  127 aagacccgtaattttgaaaataaataaatattaataatatcatattatgctcccacatttatttttatttatgatcaaataaaaataaa 215  Q
    ||||||| ||||||| ||||||||||| || | |||||||  ||||||| |||||||||||  |||| |||||||||| ||||||||||    
T  7835872 aagacccataattttaaaaataaataagtacttataatatagtattatgttcccacattta-ctttacttatgatcaattaaaaataaa 7835785  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 26423955 - 26424041
Alignment:
Q  130 acccgtaattttgaaaataaataaatattaataatatcatattatgctcccacatttattttta-tttatgatcaaataaaaataaa 215  Q
    ||||||| |||| ||| || ||||| ||||||||||| |||||||| | |||  | |||||||| ||||||||||||||||||||||    
T  26423955 acccgtattttttaaagtagataaacattaataatataatattatgtttccaagtctatttttaatttatgatcaaataaaaataaa 26424041  T

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