View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_low_38 (Length: 236)
Name: NF19909_low_38
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_38 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 28825304 - 28825539
Alignment:
| Q |
1 |
ctctcagattacacaaagtgtaaaaatttagcaaaattctttatttcttatgtgagttagacgcccccttatataggaatgacatttgattctgatttaa |
100 |
Q |
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| T |
28825304 |
ctctcatattacacaaagtgtaaaaatttagcaaaattctttatttcttatgtgagttagacgcccccttatataggaatgacatttgattctgatttaa |
28825403 |
T |
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| Q |
101 |
acatagtgtaactcctagaaaataaaatggcatcaaccatgattgtttagtggctgaataattacaagaaatgttacaaaatggagaataagtgatgggc |
200 |
Q |
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| T |
28825404 |
acatagtgtaactcctagaaaataaaatgacatcaaccatgattgtttagtggctgaataattacaagaaatgttacaaaatggagaataagtgatgggc |
28825503 |
T |
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| Q |
201 |
caccatcgatgatgattgttgatcagaggaaagttt |
236 |
Q |
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| T |
28825504 |
taccatcgatgatgattgttgatcagagaaaagttt |
28825539 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 7269404 - 7269472
Alignment:
| Q |
18 |
gtgtaaaaatttagcaaaattctttatttcttatgtgagttagacgcccccttatataggaatgacattt |
87 |
Q |
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| T |
7269404 |
gtgtaaaaatttagcaaaattttctatttttcatgtgagttacac-cccccttatataggaatgacattt |
7269472 |
T |
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