View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_low_40 (Length: 230)
Name: NF19909_low_40
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 43522314 - 43522507
Alignment:
| Q |
22 |
ggacccgaaatgattaataataatccatgatatttaactgtatggtaagtgctctttgactaggtatttttatcttatatggagttaaacatctttggca |
121 |
Q |
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| T |
43522314 |
ggacccgaaatgattaataataatccatgatatttaactgtatggtaagtgctctttgactaggtatttttatcttatatggagttaaacatct------ |
43522407 |
T |
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| Q |
122 |
ttggcactgaaggagtattatggagatgtgttctcttatgtcttaacctttttcgttgattcttgggtccatttgaatattatgttggtggaagtgatga |
221 |
Q |
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| T |
43522408 |
ttggcactgaaagagtattatggagatgtgttctcttatgtcttaacctttttcgttgattcttgggtccatttgaatattatgttggtggaagtgatga |
43522507 |
T |
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