View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_low_43 (Length: 225)
Name: NF19909_low_43
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_43 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 3899180 - 3898974
Alignment:
| Q |
1 |
taaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3899180 |
taaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacac |
3899081 |
T |
|
| Q |
101 |
accagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaatcctttcgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3899080 |
accagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaatcctttcgaag |
3898981 |
T |
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| Q |
201 |
gaggaag |
207 |
Q |
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||||||| |
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| T |
3898980 |
gaggaag |
3898974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 46283103 - 46283293
Alignment:
| Q |
6 |
agagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacacaccag |
105 |
Q |
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|||||| ||||||||| || |||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| | || || |||| ||||||| |
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| T |
46283103 |
agagaacagtatgtgtacctagcaaaactcgcagaacaagctgaacgctacgaggagatggtctccttcatgcagaagcttgtagtggggtccacaccat |
46283202 |
T |
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| Q |
106 |
cctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaatcctttc |
196 |
Q |
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| T |
46283203 |
catcagagcttagcgtcgaagagaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaatcgtttc |
46283293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 5511 - 5305
Alignment:
| Q |
1 |
taaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5511 |
taaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacac |
5412 |
T |
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| Q |
101 |
accagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaatcctttcgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
5411 |
accagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaatcctttcaaag |
5312 |
T |
|
| Q |
201 |
gaggaag |
207 |
Q |
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||||||| |
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| T |
5311 |
gaggaag |
5305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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