View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19909_low_45 (Length: 212)
Name: NF19909_low_45
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_45 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 45043554 - 45043359
Alignment:
| Q |
3 |
gtattcaatatcaatctgaccgttaccgatccaacgatgttttcgcactacctgcaccatctggaaatgtggtacctagctataatcatattcaatatca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45043554 |
gtattcaatatcaatctgaccgttaccgatccaacgatgttttcgcactacctgcaccatctggaaatgtggtacctagctataatcatattcaatatca |
45043455 |
T |
|
| Q |
103 |
atctgacccttacccatccaatggtattttagcactgcctccaccatctgcatcagaacaattgcaacatcaacaactccaacactacaatgatac |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45043454 |
atctgacccttacccatccaatggtattttagcactgcctccaccatctgcatcagaacaattgcaacatcaacaactccaacactacaatgatac |
45043359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 45043580 - 45043492
Alignment:
| Q |
64 |
tggaaatgtggtacctagctataatcatattcaatatcaatctgacccttacccatccaatggtattttagcactgcctccaccatctg |
152 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||| ||||| |||||| | | |||| ||||| ||| ||||||||| |
|
|
| T |
45043580 |
tggaaatgtggtacctagctataaccgtattcaatatcaatctgaccgttaccgatccaacgatgttttcgcactacctgcaccatctg |
45043492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 45039907 - 45039841
Alignment:
| Q |
132 |
tagcactgcctccaccatctgcatcagaacaattgcaacatcaacaactccaacactacaatgatac |
198 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
45039907 |
tagcacttcctccaccatcagcaccagaacaattggaacatcagcaactccaacactacaatgatac |
45039841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 38346283 - 38346415
Alignment:
| Q |
64 |
tggaaatgtggtacctagctataatcatattcaatatcaatctgacccttacccatccaatggtattttagcactgcctccaccatctgcatcagaacaa |
163 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||| ||| ||||| ||||||| || ||||||| ||||||||| | | |||||||||| ||||||||| |
|
|
| T |
38346283 |
tggaaatgtggtaccttactacaatcataatcaaagtcattctgatccttaccaatacaatggtgttttagcaccacatgcaccatctgcttcagaacaa |
38346382 |
T |
|
| Q |
164 |
ttgcaacatcaacaactccaacactacaatgat |
196 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |
|
|
| T |
38346383 |
atgcaacatcaacaaatccaacactactatgat |
38346415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University