View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19909_low_5 (Length: 569)
Name: NF19909_low_5
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_5 |
 | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
| [»] scaffold0137 (1 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0044 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 284
Target Start/End: Original strand, 91363 - 91642
Alignment:
| Q |
5 |
ccaaaatttgatgttttttccttcttttcgtttcttctactaatgccacatgaaccaaacctacaatagacagaaatagtcatgtcactaatttttgtag |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
91363 |
ccaaaatttgatgttttttccttcttttcgtttcttctactaatgccgcatgaaccaaacctacaatagacagaaatagtcatgcccctaatttctgtag |
91462 |
T |
|
| Q |
105 |
atatgctattaccatttcagttttggttactttttagcaaattgaacagtgacattgttataaggtgttgcaaggatatcgatgaagaggactttgaagg |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91463 |
atatgctattaccatttcagttttggttactttctagcaaattgaacaatgacattgttataaggtgttgcaaggatatcgatgaagaggactttgaagg |
91562 |
T |
|
| Q |
205 |
aaccaagcattgtattcattgtcgctgattgttgaactgaaaatgctggtaattcagctaagcgagagtttagtgttatg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91563 |
aaccaagcattgtattcattgtcgctgattgttgaactgaaaatgctggtaattcagctaagcgagagtttagtgttatg |
91642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 193 - 395
Target Start/End: Complemental strand, 44612918 - 44612716
Alignment:
| Q |
193 |
ggactttgaaggaaccaagcattgtattcattgtcgctgattgttgaactgaaaatgctggtaattcagctaagcgagagtttagtgttatggttgacat |
292 |
Q |
| |
|
||||| |||||||||||| ||| || |||||||| | |||||||||||||||||||| || ||||| |||||| | | ||||||| ||||||||||||| |
|
|
| T |
44612918 |
ggactctgaaggaaccaatcatggtgttcattgtggatgattgttgaactgaaaatgttgataattgagctaaacaacagtttagcattatggttgacat |
44612819 |
T |
|
| Q |
293 |
gaatatgggaagaatttttcacaaaatctttacttcttctacttcccttactgtgtattttaacatcgaggtaactggttcaattactgctttactgagg |
392 |
Q |
| |
|
|||||||||||||||||| | | ||| ||| ||||||||||||| ||| |||| ||||||| | | ||||||||||||||||||||| ||||| |
|
|
| T |
44612818 |
gaatatgggaagaattttcaatacaatttttgcttcttctacttcttttattgtgcattttaatttttggtgaactggttcaattactgctttgttgagg |
44612719 |
T |
|
| Q |
393 |
cat |
395 |
Q |
| |
|
||| |
|
|
| T |
44612718 |
cat |
44612716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 44613077 - 44612982
Alignment:
| Q |
65 |
ctacaatagacagaaatagtcatgtcactaatttttgtagatatgctattaccatttcagttttggttactttt-tagcaaattgaacagtgacat |
159 |
Q |
| |
|
||||||| || |||||||| | ||| ||| | ||||||||| || |||| |||||||||||||||||| |||| |||||||| ||||| |||||| |
|
|
| T |
44613077 |
ctacaatggatagaaatagccctgtgcctattctttgtagatgtgttattcccatttcagttttggttatttttctagcaaatggaacaatgacat |
44612982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 522 - 569
Target Start/End: Complemental strand, 5434 - 5387
Alignment:
| Q |
522 |
cagaagatagttgtagggtacacgccagcctcagagcttagcttggaa |
569 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5434 |
cagaagatagttgtagggtacacaccagcctcagagcttagcttggaa |
5387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 522 - 569
Target Start/End: Complemental strand, 3899103 - 3899056
Alignment:
| Q |
522 |
cagaagatagttgtagggtacacgccagcctcagagcttagcttggaa |
569 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3899103 |
cagaagatagttgtagggtacacaccagcctcagagcttagcttggaa |
3899056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 7435313 - 7435242
Alignment:
| Q |
193 |
ggactttgaaggaaccaagcattgtattcattgtcgctgattgttgaactgaaaatgctggtaattcagcta |
264 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||| || ||||| ||||| |
|
|
| T |
7435313 |
ggacattgaaggaaccaagcattgtatttattgtggctgattgttaaactgaaaatgttgataattgagcta |
7435242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University