View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19909_low_6 (Length: 477)
Name: NF19909_low_6
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 20596431 - 20595961
Alignment:
| Q |
1 |
aaccaatctgagttcattatccttagcttgtactccctattgcaagtgtgtttaccctttatcctcctcaattgccatgttttctcacctggtattttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20596431 |
aaccaatctgagttcattatccttagcttgtactccctactgcaagtgtgtttaccctttatcctcctcaattgccatgtttcctcacctggtattttta |
20596332 |
T |
|
| Q |
101 |
cacagtgcatctgactctcacatgaacccttcttcccacgataaattaccttcaccctccttttatcattcttaagaaactttaaattcctaccagaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
20596331 |
cacagtgcatctgactctcacatgaacccttcttcccacgacaaattaccttcaccctccttttatcattcttatcaaactttaaattcctgccagaatg |
20596232 |
T |
|
| Q |
201 |
tacaacaaatgttcttacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactcatagtcacgcttgttttcaggtttcttaaat |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
20596231 |
tacagcaaatgttcttacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactc--agtcacgcatgttttcaggtttcttaaat |
20596134 |
T |
|
| Q |
301 |
gtggcaaacttaagcttactcccaccattttcctcttcctcttcactttcaggttcactctctaacacatcattgttatactcctcttcctcaactctga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
20596133 |
gtggcaaacttaagcttactcccaccattttcctcttcctcttcactttcaggtccactctctaacatatcactgttatactcctcttcctcaactctga |
20596034 |
T |
|
| Q |
401 |
ctatgctagattgaccaacagtttggtttgtgttaatttgctcatccactacctcatcatcaaacacaggttc |
473 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20596033 |
ctatgctagattgaccaatagtttggtttgtgttaatttgctcatccactacctcatcatcaaacacaggttc |
20595961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 8697432 - 8696960
Alignment:
| Q |
1 |
aaccaatctgagttcattatccttagcttgtactccctattgcaagtgtgtttaccctttatcctcctcaattgccatgttttctcacctggtattttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
8697432 |
aaccaatctgagttcattatccttagcttgtactccctactgcaagtgtgtttaccctttatcctcctcaattgccatgtttcctcatctggtattttta |
8697333 |
T |
|
| Q |
101 |
cacagtgcatctgactctcacatgaacccttcttcccacgataaattaccttcaccctccttttatcattcttaagaaactttaaattcctaccagaatg |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
8697332 |
cacagtgcatttgactctcacatgaacccttcttcccacgacatattaccttcaccctccttttatcattcttaacaaactttaaattcctgccagaatg |
8697233 |
T |
|
| Q |
201 |
tacaacaaatgttcttacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactcatagtcacgcttgttttcaggtttcttaaat |
300 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
8697232 |
tacagcaaatgttctaacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactcatagtcacgcatattttcaggtttcttaaat |
8697133 |
T |
|
| Q |
301 |
gtggcaaacttaagcttactcccaccattttcctcttcctcttcactttcaggttcactctctaacacatcattgttatactcctcttcctcaactctga |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8697132 |
gtggcaaacttaagcttattcccaccattttcctcttcatcttcactttcagctccactctctaacacatcactgttatactcctcttcctcaactctga |
8697033 |
T |
|
| Q |
401 |
ctatgctagattgaccaacagtttggtttgtgttaatttgctcatccactacctcatcatcaaacacaggttc |
473 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8697032 |
ctatgctagattgaccaacattttggtttgtgttagtttgctcacccactacctcatcatcaaacacaggttc |
8696960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 23330753 - 23330698
Alignment:
| Q |
49 |
tgtttaccctttatcctcctcaattgccatgttttctcacctggtatttttacaca |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
23330753 |
tgttttccctttatcctcctcaattgccatgtttcttcatttggtatctttacaca |
23330698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 20622370 - 20622315
Alignment:
| Q |
49 |
tgtttaccctttatcctcctcaattgccatgttttctcacctggtatttttacaca |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
20622370 |
tgttttccctttatcctcctcaattgccatgtttcttcatttggtatctttacaca |
20622315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 37104373 - 37104437
Alignment:
| Q |
211 |
gttcttacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactcatagtc |
275 |
Q |
| |
|
||||| || ||||||||||| | |||||| |||||||||| |||||| ||||||| |||||||| |
|
|
| T |
37104373 |
gttctcaccgcatcttgaaactgcttcttaaacacaaaatatgtccctgcctcccattcatagtc |
37104437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University