View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1990_high_1 (Length: 366)
Name: NF1990_high_1
Description: NF1990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1990_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 45312619 - 45312285
Alignment:
| Q |
16 |
gttactcctttaagaagtttgatgaataacttactatggatttacaatgcaacacaaaagttacataccaaattcctacattttcactaaaattctattt |
115 |
Q |
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| T |
45312619 |
gttactcctttaagaagtttgatgaataacttactatggatttacaatgtaacacaaaagttacataccaaattcctacattttcactaaaattctattt |
45312520 |
T |
|
| Q |
116 |
gacatgagataaaagtaagtttagacatgaaatcaaacataaccaaatgtacagtctatgggaccattctattacgaggctatgtttatattaatctata |
215 |
Q |
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| T |
45312519 |
gacatgagataaaagtaagtttagacatgaaatcaaacataaccaaatgtacagtctatgggaccattctattacgaggctatgtttatattaatctata |
45312420 |
T |
|
| Q |
216 |
ggaccattcatgtatttagatattttgttgaactccaaatcaaccgataaaggatgaagttttgaacttgcttcttttcgaggaaaacctcgagattact |
315 |
Q |
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| T |
45312419 |
ggaccattcatgtatttagatattttgttgaactccaaatcaaccgataaaggatgaagttttgaacttgcttcttttcgaggaaaacctcgagattact |
45312320 |
T |
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| Q |
316 |
tctaccacatatcattcaaaaccacatctcacaca |
350 |
Q |
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| T |
45312319 |
tctaccacatatcattcaaaaccacatctcacaca |
45312285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 54633079 - 54633144
Alignment:
| Q |
16 |
gttactcctttaagaagtttgatgaataacttactatggatttacaatgcaacacaaaagttacat |
81 |
Q |
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| T |
54633079 |
gttactcctttaagaagtttgatgattaacttaagatggatttacaatgtaactcaaaaggtacat |
54633144 |
T |
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