View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1990_high_3 (Length: 316)
Name: NF1990_high_3
Description: NF1990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1990_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 42899293 - 42899010
Alignment:
| Q |
20 |
ctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcagatgatggttggtaggatggaagtgtaggagtaggaccatttctagggttagggtt |
119 |
Q |
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| T |
42899293 |
ctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcagatgatggttggtaggatggaagtgtagaagtaggaccatttctagggttagggtt |
42899194 |
T |
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| Q |
120 |
ttcataaaggtgtagatcttgatccaaacttgaatagtttgaagagagatcaatggatgattgacaaagccaagagggtatttgtacttcttgttctggc |
219 |
Q |
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| T |
42899193 |
ttcataaaggtgtagatcttgatccaaacttgaatagtttgaagagagatcaatggatgattgacaaagccaagagggtatttgtacttcttgttctggc |
42899094 |
T |
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| Q |
220 |
cttaacatgttgaaactttgatgctctttcttcaatgtgaagccttggatatcttgtgtttggagattgttcatgttgtgatga |
303 |
Q |
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| T |
42899093 |
cttaacatgttgaaactttgatgctctttcttcaatgtgaagccttggatatcttgagtttggagattgttcatgttgtgatga |
42899010 |
T |
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