View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1990_high_7 (Length: 226)
Name: NF1990_high_7
Description: NF1990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1990_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 8928781 - 8928975
Alignment:
| Q |
15 |
aatgaaatcaatctaattcatagttacgttcatcaaacattcactaaaacccaaggtaaatagaaacgtaagttgagnnnnnnntatttctcttttttgt |
114 |
Q |
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| T |
8928781 |
aatgaaatcaatctaattcatagttacgttcatcaaacattcactaaaacccaaggtaaatagaaacgtaagctgagaaaaaaatatttctcttttttgt |
8928880 |
T |
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| Q |
115 |
tttctttcttcatgaaatggaattgttattctattcgttttgggaaaatttgtt-catttgccacttggatttattttggcaagttggctacttg |
208 |
Q |
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| T |
8928881 |
tttctttcttcatgaaatggaattgttattctattcgttttgggaaaattcgttccatttgccacttggatttattttggcaagttggctacttg |
8928975 |
T |
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