View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1990_low_1 (Length: 376)
Name: NF1990_low_1
Description: NF1990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1990_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 41658100 - 41657757
Alignment:
| Q |
12 |
aacctgtgaggatattatgttgggaaggcattcagacctcaggttttcgtcatattcaaaaatcgttgtaaataaacaatgttgcactatggtttccaaa |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41658100 |
aacctgtgaggatattatgttgggaaggcattcagacctcaggttttcgtcatattcaaaaatcgttgtaaataaacaatgttgcactatggtttccaac |
41658001 |
T |
|
| Q |
112 |
aatttttcctcaaacaatgatgagttgcaagtttttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcg |
211 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41658000 |
attttttcctcaaacaatgatgagttgcaagtttttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcg |
41657901 |
T |
|
| Q |
212 |
aagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcatagg |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41657900 |
aagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcatagg |
41657801 |
T |
|
| Q |
312 |
acctgacctagatgccacttcacctaaaggtatgttaggtccga |
355 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41657800 |
acctgacctagatgccacttcacctaaaggtatgttaggtccga |
41657757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 359
Target Start/End: Original strand, 43211327 - 43211675
Alignment:
| Q |
12 |
aacctgtgaggatattatgttgggaaggcattcagacctcaggttttcgtcatattcaaaaatcgttgtaaataaacaatgttgcactatggtttccaaa |
111 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43211327 |
aacctgtgaggatattaggttaggaagacattcagatcttatgttttcgtcatattcaaaaatcgttgtaaataaacaatgttgcactacggtttccaac |
43211426 |
T |
|
| Q |
112 |
aatttt-tcctcaaacaatgatgagttgcaagtttttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattc |
210 |
Q |
| |
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| |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
43211427 |
atttttttcctcaaacaatgatgagttgcaaatttttacctgggtttcaaggggatcagcctcgcgtgaaacaatatgttgtaagctaacaatcacattc |
43211526 |
T |
|
| Q |
211 |
gaagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcatag |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43211527 |
gaagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcatag |
43211626 |
T |
|
| Q |
311 |
gacctgacctagatgccacttcacctaaaggtatgttaggtccgacatg |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43211627 |
gacctgacctagatgccacttcacctaaaggtatgttaggtccgacatg |
43211675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 122 - 348
Target Start/End: Original strand, 43226123 - 43226349
Alignment:
| Q |
122 |
caaacaatgatgagttgcaagtttttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaa |
221 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||| ||| | ||||||| |||||||||||||||| |||||||||||||||| ||||| ||||| ||||| |
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|
| T |
43226123 |
caaacaatcatgagttgtaagcttttacctgggagtctacgggatcaacctcgcgagaaacgatttgttgtaagctaacaactacattggaagcagccaa |
43226222 |
T |
|
| Q |
222 |
aatggggtcaatagcatgttgaggattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgaccta |
321 |
Q |
| |
|
||||||||| |||||||| |||||| ||||| |||| || ||| |||| ||||||||||||| |||||| |||| ||||||| ||||||||| ||||| |
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| T |
43226223 |
aatggggtcgatagcatggtgaggaatggctccatgaccccccatgccgcttattactgcttcaaagaaaccacatcctgcagccataggaccagacctc |
43226322 |
T |
|
| Q |
322 |
gatgccacttcacctaaaggtatgtta |
348 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
43226323 |
gatgccacttcacctaaaggtaagtta |
43226349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 145 - 348
Target Start/End: Original strand, 43204438 - 43204641
Alignment:
| Q |
145 |
tttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgag |
244 |
Q |
| |
|
|||||||| | ||| ||||||||| |||||||||||| || ||||||||||||||||||||||| |||| ||||| || ||||| |||| |||||||| |
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|
| T |
43204438 |
tttacctgagagtcgaggggatcaatctcgcgagaaacaatttgttgtaagctaacaatcacattggaagttgccaatatagggtctatagaatgttgag |
43204537 |
T |
|
| Q |
245 |
gattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtat |
344 |
Q |
| |
|
|| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||| ||||| |
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|
| T |
43204538 |
gaatggctgcatggcctcccctgccgcttattactgctttaaagaagccatttcctgcaaatataggaccggacctagaagccacttcacctagaggtaa |
43204637 |
T |
|
| Q |
345 |
gtta |
348 |
Q |
| |
|
|||| |
|
|
| T |
43204638 |
gtta |
43204641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 122 - 348
Target Start/End: Complemental strand, 41651978 - 41651752
Alignment:
| Q |
122 |
caaacaatgatgagttgcaagtttttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaa |
221 |
Q |
| |
|
|||||||| |||||||| || ||||||||||| ||| | ||||||| ||||||||||||| || |||||||||||||||| ||||| ||||||||||| |
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|
| T |
41651978 |
caaacaatcatgagttgtaaacttttacctgggagtctacgggatcaacctcgcgagaaacaatttgttgtaagctaacaactacattggaagccgccaa |
41651879 |
T |
|
| Q |
222 |
aatggggtcaatagcatgttgaggattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgaccta |
321 |
Q |
| |
|
||||||||| |||||||| |||||| ||||| |||| || ||| |||| ||||||||||||| |||||| || | ||||||| |||||||| |||||| |
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|
| T |
41651878 |
aatggggtcgatagcatggtgaggaatggctccatgaccccccatgccgcttattactgcttcaaagaaaccgcttcctgcagcaataggaccagaccta |
41651779 |
T |
|
| Q |
322 |
gatgccacttcacctaaaggtatgtta |
348 |
Q |
| |
|
|| ||||||||||||||||||| |||| |
|
|
| T |
41651778 |
gaagccacttcacctaaaggtaagtta |
41651752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 41652092 - 41652009
Alignment:
| Q |
12 |
aacctgtgaggatattat--gttgggaaggcattcagacctcaggttttcgtcatattcaaaaatcgttgtaaataaacaatgt |
93 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||| || |||||||||||||||||||| ||||||| ||||||| ||| ||||| |
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|
| T |
41652092 |
aacctgcgaggatattatttgttaggaaggcatttaggcctcaggttttcgtcatattaaaaaatcattgtaaacaaataatgt |
41652009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 43225979 - 43226046
Alignment:
| Q |
26 |
ttatgttgggaaggcattcagacctcaggttttcgtcatattcaaaaatcgttgtaaataaacaatgt |
93 |
Q |
| |
|
||||||| | |||||||| ||||||||||||||| ||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
43225979 |
ttatgttagaaaggcatttagacctcaggttttcatcatattcaaaaatcattgtaaacaaataatgt |
43226046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 122 - 341
Target Start/End: Original strand, 25928362 - 25928589
Alignment:
| Q |
122 |
caaacaatgatgagttgcaagtttttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaa |
221 |
Q |
| |
|
|||||| | |||||||| ||| |||||| |||| ||| | ||||||| ||||||||||||| || ||||||||||||| | | ||||| ||||||||||| |
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|
| T |
25928362 |
caaacattcatgagttgtaagcttttacttgggagtctatgggatcaacctcgcgagaaactatttgttgtaagctaatagttacattggaagccgccaa |
25928461 |
T |
|
| Q |
222 |
aatggggtcaatagcatgttgaggattggctgcatggcctcc--------cttgcctcttattactgctttaaagaagccacctcctgcaagcataggac |
313 |
Q |
| |
|
|||||||| | | |||| |||||| ||||| |||| || || | |||| ||||||||||||| |||||| |||| ||||||||| ||||||| |
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|
| T |
25928462 |
aatggggttgagaacatggtgaggaatggctccatgccccccccccaccacatgccgcttattactgcttcaaagaaaccacttcctgcaagaataggac |
25928561 |
T |
|
| Q |
314 |
ctgacctagatgccacttcacctaaagg |
341 |
Q |
| |
|
| |||||| |||| | ||||||||||| |
|
|
| T |
25928562 |
cagacctaaatgcaatgtcacctaaagg |
25928589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 335
Target Start/End: Original strand, 5071208 - 5071398
Alignment:
| Q |
145 |
tttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgag |
244 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||||| | || |||| ||||| |||| || ||||| || || ||||| || |||| ||||||| |
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| T |
5071208 |
tttacctgggagtctaaaggatcagcctcgcgagaaacaaggtgctgtaggctaataatcgcaccagaagctgctaatatgggatctatagattgttgag |
5071307 |
T |
|
| Q |
245 |
gattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacc |
335 |
Q |
| |
|
|| | |||||||| |||||||| || |||||| ||||| |||||| |||| |||||| | || ||||| ||||| || | ||||||||| |
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|
| T |
5071308 |
gaatagctgcatgacctccctttccacttatttttgcttcaaagaatccacttcctgccaatattggaccagacctggaggacacttcacc |
5071398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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