View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1990_low_10 (Length: 217)
Name: NF1990_low_10
Description: NF1990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1990_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 9034340 - 9034534
Alignment:
| Q |
11 |
tgagatgaataaaaccaagcaaacataatctaattctccaatgaccattttttaaactacatattctacaataaaagtgggtttctaaaatcaagtttga |
110 |
Q |
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| T |
9034340 |
tgagatgaataaaaccaagcaaacataatctaatttcccaatgaccattttttaaactacagattctacgataaaagtgggtttctaaaatcaagtctca |
9034439 |
T |
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| Q |
111 |
aaacattaaatatccgcaagttgcgactaaatcagatgaattttactatgaatttgctttggaatgtttggttcttggaattgttccatgttttt |
205 |
Q |
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| T |
9034440 |
aaacattaaatatccgcaagttgcgactaaatcagatgaattttactatcaatttgctttggaatgtttggttcttggaattgttccatgttttt |
9034534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 936178 - 936076
Alignment:
| Q |
21 |
aaaaccaagcaaacataatctaattctccaatgaccattttttaaac-tacatattctacaataaaagtgggtttctaaaatcaagtttgaaaacattaa |
119 |
Q |
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||||||||||||||| | |||||| | |||||||| ||||||| | || | || |||| |||||| |||||||||||||||| || ||||||||||| |
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| T |
936178 |
aaaaccaagcaaacaaattctaataccccaatgacaatttttttatggtaaagatgctacgataaaaatgggtttctaaaatcatgtcagaaaacattaa |
936079 |
T |
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| Q |
120 |
ata |
122 |
Q |
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| T |
936078 |
ata |
936076 |
T |
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