View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1990_low_5 (Length: 295)
Name: NF1990_low_5
Description: NF1990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1990_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 25816912 - 25816643
Alignment:
| Q |
10 |
catcatcaatccacaagttcatcaacccaacctacatccggctcatgaacatttgatgcagcagccattgttgaggtgttgctagtgtcgcccaattcta |
109 |
Q |
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| T |
25816912 |
catcctcaatccacaagttcatcaacccaacctacatccggctcatcaacatttgatgcagcagccattgttgaagtgttgctagtgtcgcccaattcta |
25816813 |
T |
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| Q |
110 |
attttctatcacgagagcgcaaaccggagaaggcagttgaaggctccaatgtaactgaggtagcatctggaagcatggaattaaagctcgccatgctgct |
209 |
Q |
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| T |
25816812 |
attttctatcacgagagcgcaaaccagagaaggaagttgaaggctccaatgtaactgaggtagcatctggaagcatggaattaaagctcgccatgctgct |
25816713 |
T |
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| Q |
210 |
gctctcgataaagttctggctctgcttcgaaagggcatcatatcttgaattcaaaattggatcaaacctg |
279 |
Q |
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| T |
25816712 |
gctctcgataaagttctggctctgcttcgaaagggcatcatatcttgaattcaaaattggataaaacctg |
25816643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 262
Target Start/End: Complemental strand, 25822615 - 25822459
Alignment:
| Q |
106 |
tctaattttctatcacgagagcgcaaaccggagaaggcagttgaaggctccaatgtaactgaggtagcatctggaagcatggaattaaagctcgccatgc |
205 |
Q |
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| T |
25822615 |
tctacttttctatcaggggagtgccaatcagagaaggcagtagaaggttctaatgcaactgaggtagcagaaggaagcttggaattaaagcttgccacgc |
25822516 |
T |
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| Q |
206 |
tgctgctctcgataaagttctggctctgcttcgaaagggcatcatatcttgaattca |
262 |
Q |
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| T |
25822515 |
tgctgcactcgaaaaagctctggctccgatttgaaaaggcatcatatcttgaattca |
25822459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 249
Target Start/End: Complemental strand, 33648747 - 33648607
Alignment:
| Q |
106 |
tctaattttctatcacgagagcgcaaaccggagaaggcagttgaaggctccaatgtaactgaggtagcatctggaagcatggaattaaagctcgccatgc |
205 |
Q |
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|||||||||| |||| |||||| | |||| |||||||||| |||| |||| | ||||||| ||||| |||||| ||||||||| |||||||||| |
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| T |
33648747 |
tctaattttccatcaggagagccccaaccagagaaggcag---aaggttccatggcaactgagctagcagaaggaagctcggaattaaatctcgccatgc |
33648651 |
T |
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| Q |
206 |
tgctgctctcgataaagttctggctctgcttcgaaagggcatca |
249 |
Q |
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| T |
33648650 |
tgctgcactcaataaagctttggctacgcttcgaaaaggcatca |
33648607 |
T |
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