View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19910_high_14 (Length: 219)
Name: NF19910_high_14
Description: NF19910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19910_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 3531734 - 3531932
Alignment:
| Q |
5 |
aactgagttaagctcacagggtatag-taattcaactttattaaggtgtaaaaatgacatacctagaagcttcttttggacaagttgaaacctttgagga |
103 |
Q |
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| T |
3531734 |
aactgagctaagttcacatggtataggtaattcaactttattaaggtgtaaaaatgacatacctagaagcttcttttggacaagttgaaacctttgagga |
3531833 |
T |
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| Q |
104 |
aaatctggatatcgaagtgatttaaaatcaatattccatagaccataatgctcactcacattactttccttttctctaatatagtaagaaccttgtgca |
202 |
Q |
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| T |
3531834 |
aaatctggatatcgaagtgatttaaaatcaatattccatagaccataatgctcactcacattactttccttttctctaatatagtaagaaccttgtgca |
3531932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 3527345 - 3527493
Alignment:
| Q |
54 |
aaaatgacatacctagaagcttcttttggacaagttgaaacctttgaggaaaatctggatatcgaagtgatttaaaatcaatattccatagaccataatg |
153 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || | |
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| T |
3527345 |
aaaatgacatacctagaagcttcttttgcacaagttgaaatctttgagaaaaatctggatatcgaagtgatttaaaatcaatattccatataccaaaagg |
3527444 |
T |
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| Q |
154 |
ctcactcacattactttccttttctctaatatagtaagaaccttgtgca |
202 |
Q |
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| T |
3527445 |
ctcactcgcattactttctttatctctaatatagtaagaaccttgtgca |
3527493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 52 - 202
Target Start/End: Original strand, 3549063 - 3549213
Alignment:
| Q |
52 |
taaaaatgacatacctagaagcttcttttggacaagttgaaacctttgaggaaaatctggatatcgaagtgatttaaaatcaatattccatagaccataa |
151 |
Q |
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| T |
3549063 |
taaaaatgccatacctagaagcttcttctgcaaaagttgaaacctttgagggaattcttgatatcgaagtgaactaaaatcaatactccataaaccataa |
3549162 |
T |
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| Q |
152 |
tgctcactcacattactttccttttctctaatatagtaagaaccttgtgca |
202 |
Q |
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|| || |||||| || |||| |||||||||||||||||||||||||||||| |
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| T |
3549163 |
tgttccctcacaatattttctttttctctaatatagtaagaaccttgtgca |
3549213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 202
Target Start/End: Original strand, 3554654 - 3554804
Alignment:
| Q |
52 |
taaaaatgacatacctagaagcttcttttggacaagttgaaacctttgaggaaaatctggatatcgaagtgatttaaaatcaatattccatagaccataa |
151 |
Q |
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||||||| |||||||| ||||||||| || | ||||||||||||||||||||| || ||||| ||||| ||||||| | |||||| |||| || |
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| T |
3554654 |
taaaaatctcatacctaaaagcttcttatgcataagttgaaacctttgaggaaattcaatatatctaagtgtgcgaaaatcataactccatataccaaaa |
3554753 |
T |
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| Q |
152 |
tgctcactcacattactttccttttctctaatatagtaagaaccttgtgca |
202 |
Q |
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|||||||||| || |||| |||| ||| |||||||||| |||||||||| |
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| T |
3554754 |
gtctcactcacaataatttcattttttcttatatagtaagcaccttgtgca |
3554804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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