View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19910_high_4 (Length: 526)
Name: NF19910_high_4
Description: NF19910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19910_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 21 - 517
Target Start/End: Complemental strand, 37130005 - 37129511
Alignment:
| Q |
21 |
aaagacgtgcaagatcatttggaattcttccgccacgaaatgaactttggaggtcaaggaatctcaagtttcttagtgaaccaaataattctggaaaatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37130005 |
aaagacgtgcaagatcatttggaattcttccgccacgaaatgaactttggaggtcaaggaatctcaagtttcttagtgaaccaaataattctggaaaatt |
37129906 |
T |
|
| Q |
121 |
atcgtttgacattcaattaaaactgagattcaaatactttaaattctgcaaatcaatcactgatctgttgatcttgcctctaaaaggaataacctgatcg |
220 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37129905 |
atcgtttgacattcgattaaaactgagattcaaatactttaaattctgcaaatcaatcactgatctgttgatcttgcctctaaaaggaataacctgatcg |
37129806 |
T |
|
| Q |
221 |
ccgtttagatcaagcatttcggcatgaccagtttgattgctacaacctattccttcccatgcacaacaaccatcacttttactgtcccaagaaggcaaaa |
320 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
37129805 |
ccgtttagatcaagcatttcaacatgaccagtttgattgctacaacctattccttcccatgcacagcaaccatcacttttactgtcccaagattgcaaaa |
37129706 |
T |
|
| Q |
321 |
ggttagagtcatccaacacaaggcttgccttcaacacaaggagagcatgtctctccttctctatgcaagcaacatgttttgcagcaacagctacaactcc |
420 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37129705 |
ggttagagtcatccaacacaaagcttgccttcaactcaaggagagcatgtctctccttctgtatgcaagcaacatgttttgccgcaacagctacaactcc |
37129606 |
T |
|
| Q |
421 |
agagtagttggagaaaagaaggtcgaactgcaacacaacaaagattgctccaactataacttgatagtacatacaacaacactactcatcttcatct |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37129605 |
agagtagttggagaaaagaaggtcgaactgcaacacaacaaagattgttccaac--taacttgatagtacatacaacaacactactcatcttcatct |
37129511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 21 - 388
Target Start/End: Complemental strand, 37144303 - 37143936
Alignment:
| Q |
21 |
aaagacgtgcaagatcatttggaattcttccgccacgaaatgaactttggaggtcaaggaatctcaagtttcttagtgaaccaaataattctggaaaatt |
120 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
37144303 |
aaagacgagcaagattatttggaattcttcctccatcaaatgaagcatggaggtcaaggaatctcaagtttcttagagagccaaataattctggaaaatt |
37144204 |
T |
|
| Q |
121 |
atcgtttgacattcaattaaaactgagattcaaatactttaaattctgcaaatcaatcactgatctgttgatcttgcctctaaaaggaataacctgatcg |
220 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||||||| ||||||||||| || || |||| |
|
|
| T |
37144203 |
attgtttgacatctgattaaaactgagattcaaatactttaaatgctgcaaattaatcaatgatgcgttgatcttgtctctaaaaggaccaaactaatcg |
37144104 |
T |
|
| Q |
221 |
ccgtttagatcaagcatttcggcatgaccagtttgattgctacaacctattccttcccatgcacaacaaccatcacttttactgtcccaagaaggcaaaa |
320 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
37144103 |
ccgtttagatcaagaatttcaacatgaccagtttgattgctgcacgtgattccttcccatgcacaacaaccatcaatcttactgtcccaagtaggcaaaa |
37144004 |
T |
|
| Q |
321 |
ggttagagtcatccaacacaaggcttgccttcaacacaaggagagcatgtctctccttctctatgcaa |
388 |
Q |
| |
|
| || || || ||||| | |||| |||||| | ||||||||||||||||||| |||||| ||||| |
|
|
| T |
37144003 |
gagaagtgttatataacaccatgctttccttcagctcaaggagagcatgtctctcattctctttgcaa |
37143936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 29 - 412
Target Start/End: Complemental strand, 37137153 - 37136770
Alignment:
| Q |
29 |
gcaagatcatttggaattcttccgccacgaaatgaactttggaggtcaaggaatctcaagtttcttagtgaaccaaataattctggaaaattatcgtttg |
128 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||| || | ||||| |
|
|
| T |
37137153 |
gcaagatcatttggaattcttccgccagagtatgaagctttgaggtcaaggaatctcaagttgcttagagaaccaaataattctggaatatcactgtttg |
37137054 |
T |
|
| Q |
129 |
acattcaattaaaactgagattcaaatactttaaattctgcaaatcaatcactgatctgttgatcttgcctctaaaaggaataacctgatcgccgtttag |
228 |
Q |
| |
|
| ||| || ||| |||||||||||||||| |||||||||||||| |||| |||| |||| |||| ||||||| || ||||||||| ||||| |
|
|
| T |
37137053 |
ttaacagattccaagagaggttcaaatactttaaatgctgcaaatcaatcaatgatatgttaatctcacctcgaaaaggaccaaactgatcgccatttag |
37136954 |
T |
|
| Q |
229 |
atcaagcatttcggcatgaccagtttgattgctacaacctattccttcccatgcacaacaaccatcacttttactgtcccaagaaggcaaaaggttagag |
328 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||| ||||| | ||||||||||| || |
|
|
| T |
37136953 |
atcaagcatttcaacatggccagtttgattgctacatgtgattccttcccatgcacaacaacaatcactcttactatcccaggtaggcaaaaggtaagta |
37136854 |
T |
|
| Q |
329 |
tcatccaacacaaggcttgccttcaacacaaggagagcatgtctctccttctctatgcaagcaacatgttttgcagcaacagct |
412 |
Q |
| |
|
|| || | |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
37136853 |
tcttcgacgacaaggcttgccttcaactcaaggagagcatgtctctccttctctatgcaaccaacatgtttttcagcaacagct |
37136770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 37162747 - 37162281
Alignment:
| Q |
19 |
cgaaagacgtgcaagatcatttggaattcttccgccacgaaatgaactttggaggtcaaggaatctcaagtttcttagtgaaccaaataattctggaaaa |
118 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| |
|
|
| T |
37162747 |
cgaaagacgagaaagatcatttggaattcttcctccataaaatgaactttggaggtcaaggaatctcaagttgcttaaagaaccaaataattctgggaaa |
37162648 |
T |
|
| Q |
119 |
ttatcgtttgacattcaattaaaactgagattcaaatactttaaattctgcaaatcaatcactgatctgttgatcttgcctctaaaaggaataacctgat |
218 |
Q |
| |
|
| || |||||| | | | | | ||| |||||||||||||||| |||| || |||| |||| ||||||||||||||| ||||||| || |||| |
|
|
| T |
37162647 |
tcattgtttgaaaacgtactccatccgaggttcaaatactttaaatgtcgcaactccatcaatgatgtgttgatcttgcctcgaaaaggaccaaactgaa |
37162548 |
T |
|
| Q |
219 |
cgccgtttagatcaagcatttcggcatgaccagtttgattgctacaacctattccttcccatgcacaacaaccatcacttttactgtcccaagaaggcaa |
318 |
Q |
| |
|
|||||||||| |||| |||| |||| |||||||||||||||||||| | | ||| |||||||||||| ||||| ||||||||||||| || ||| |
|
|
| T |
37162547 |
aaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacat---tcactcttactgtcccaagtagacaa |
37162451 |
T |
|
| Q |
319 |
aaggttagagtcatccaacacaaggcttgccttcaacacaaggagagcatgtctctccttctctatgcaa---------------gcaacatgttttgca |
403 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
37162450 |
aaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccaccagaaacagaggcaacatgttttgca |
37162351 |
T |
|
| Q |
404 |
gcaacagctacaactccagagtagttggagaaaagaaggtcgaactgcaacacaacaaagattgctccaacta |
476 |
Q |
| |
|
||| | ||| ||||| | |||||||| ||||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
37162350 |
tcaa---ccacagctccataatagttggacaaaagaaagccgaactgcaacagaacaaagattgctccaacta |
37162281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 38745772 - 38745420
Alignment:
| Q |
19 |
cgaaagacgtgcaagatcatttggaattcttccgccacgaaatgaactttggaggtcaaggaatctcaagtttcttagtgaaccaaataattctggaaaa |
118 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| ||| |||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
38745772 |
cgaaagacgagcaagatcctttggaattcttcccccatcaaatgaaccttggaggtcaagaaatctcaagtttcttagaaaaccaaataattctgggaaa |
38745673 |
T |
|
| Q |
119 |
ttatcgtttgacattcaattaaaactgagattcaaatactttaaattctgcaaatcaatcactgatctgttgatcttgcctctaaaaggaataacctgat |
218 |
Q |
| |
|
| | |||||| | ||| ||||||| |||||||||||||||| | |||| || ||| |||| ||||||| || ||||| |
|
|
| T |
38745672 |
taactgtttgaaaacagattccaactgaggttcaaatactttaaatgccgcaactcgatc-----------------gccttcaaaaggaccaaactgat |
38745590 |
T |
|
| Q |
219 |
cgccgtttagatcaagcatttcggcatgaccagtttgattgctacaacctattccttcccatgcacaacaaccatcacttttactgtcccaagaaggcaa |
318 |
Q |
| |
|
| | ||||||||||| ||||| |||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| || |
|
|
| T |
38745589 |
cactatttagatcaagtatttcaacatggccagtttgattcctacaaccaattccttcccatgcacaacaatcatcactcttagtgtcccaagaaggtaa |
38745490 |
T |
|
| Q |
319 |
aaggttagagtcatccaacacaaggcttgccttcaacacaaggagagcatgtctctccttctctatgcaa |
388 |
Q |
| |
|
||||| || ||||||||||||||| | || ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38745489 |
aaggtaagtgtcatccaacacaagacctgacttcaactcaaggagagcatgtctctccttctctatgcaa |
38745420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 35144394 - 35144470
Alignment:
| Q |
20 |
gaaagacgtgcaagatcatttggaattcttccgccacgaaatgaactttggaggtcaaggaatctcaagtttcttag |
96 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||| ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
35144394 |
gaaagacaggcaagatcatttggaattcttccatgatgaaacgaagcttggaggtcaaggaatctcaagttttttag |
35144470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 476
Target Start/End: Original strand, 35144858 - 35145138
Alignment:
| Q |
197 |
cctctaaaaggaataacctgatcgccgtttagatcaagcatttcggcatgaccagtttgattgctacaacctattccttcccatgcacaacaaccatcac |
296 |
Q |
| |
|
|||| ||||||| || ||||||||| |||| |||||||| ||| |||| |||||||||||||||||| | | |||| |||| |||||||| || | |
|
|
| T |
35144858 |
cctcgaaaaggaccaaactgatcgccatttacatcaagcacttcaacatggccagtttgattgctacaaacgacccctttccattcacaacaa---tctc |
35144954 |
T |
|
| Q |
297 |
ttttactgtcccaagaaggcaaaaggttaga----gtcatccaacacaaggcttgccttcaacacaaggagagcatgtctctccttctctatgcaagc-- |
390 |
Q |
| |
|
| ||||| ||||| |||| ||| |||| || ||| ||| |||||||| ||||||||| |||||| ||||||||||||||||||||||| | |
|
|
| T |
35144955 |
tcttactctcccacgaagacaataggtaagtaagtgtcttccgccacaaggccagccttcaactgtaggagaccatgtctctccttctctatgcaaccta |
35145054 |
T |
|
| Q |
391 |
----aacatgttttgcagcaacagctacaactccagagtagttggagaaaagaaggtcgaactgcaacacaacaaagattgctccaacta |
476 |
Q |
| |
|
||||||||||||| | |||||||||| | |||||||| |||||||| || |||||||||| ||| |||||| |||||||| |
|
|
| T |
35145055 |
aaccaacatgttttgcaac------tacaactccacaatagttggacaaaagaagctctaactgcaacaatacatagattgttccaacta |
35145138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 3025027 - 3025396
Alignment:
| Q |
19 |
cgaaagacgtgcaagatcatttggaattcttccgccacgaaatgaactttggaggtcaaggaatctcaagtttcttagtgaaccaaataattctggaaaa |
118 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| ||| |||||||| |||||| ||||| ||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
3025027 |
cgaaagacgagcaagatcctttggaattcttcccccatcaaatgaaccttggagatcaagaaatctcaagtttcttagagaaccaaataattctgggaaa |
3025126 |
T |
|
| Q |
119 |
ttatcgtttgacattcaattaaaactgagattcaaatactttaaattctgcaaatcaatcactgatctg-ttgatcttgcctctaaaaggaataacctga |
217 |
Q |
| |
|
| | |||||| | ||| ||||||| |||||||||||||||| | |||| || |||| || ||| ||||| | |||| ||||||| || |||| |
|
|
| T |
3025127 |
taactgtttgaaaacagattccaactgaggttcaaatactttaaatgccgcaactcgatcaatg-tctcattgatgtcgcctacaaaaggaccaaactga |
3025225 |
T |
|
| Q |
218 |
tcgccgtttagatcaagcatttcggcatgaccagtttgattgctacaacctattccttcccatgcacaacaaccatcacttttactgtcccaagaaggca |
317 |
Q |
| |
|
|| || ||||||||||| ||||| |||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
3025226 |
tcaccatttagatcaagtatttcaacatggccagtttcattgctacaaccaattccttcccatgcacaacaatcatcactcttactgtcccaagaaggta |
3025325 |
T |
|
| Q |
318 |
aaaggttagagtcatccaacacaaggcttgccttcaacacaaggagagcatgtctctccttctctatgcaa |
388 |
Q |
| |
|
|||||| || || |||||||||||| | || ||||||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
3025326 |
aaaggtaagtgttatccaacacaagacctgacttcaactcaaggagtgcttgtctctccttctctatgcaa |
3025396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 29723686 - 29723743
Alignment:
| Q |
30 |
caagatcatttggaattcttccgccacgaaatgaactttggaggtcaaggaatctcaa |
87 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| |||||||||||||| |||||| |
|
|
| T |
29723686 |
caagatcatttggatttcttccgtcatcaaatgaaccttggaggtcaaggagtctcaa |
29723743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University