View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19910_high_6 (Length: 335)

Name: NF19910_high_6
Description: NF19910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19910_high_6
NF19910_high_6
[»] chr8 (2 HSPs)
chr8 (62-224)||(22573166-22573325)
chr8 (148-235)||(9028642-9028729)
[»] chr4 (2 HSPs)
chr4 (59-232)||(33235720-33235886)
chr4 (148-229)||(45413778-45413859)
[»] chr1 (4 HSPs)
chr1 (153-235)||(45792691-45792773)
chr1 (148-229)||(19806764-19806845)
chr1 (153-230)||(50004909-50004986)
chr1 (148-232)||(26793780-26793864)
[»] chr2 (1 HSPs)
chr2 (153-224)||(7670408-7670479)
[»] chr7 (2 HSPs)
chr7 (147-223)||(39594667-39594743)
chr7 (153-229)||(23318951-23319027)
[»] chr6 (2 HSPs)
chr6 (147-229)||(8547442-8547524)
chr6 (146-216)||(8573794-8573864)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 22573325 - 22573166
Alignment:
Q  62 tggagtagtatagccgcaggtgggagtcgaggaaaggttttggaagaaatagaaaacacgtgtatgtagttttattctatcatgttgttgttaacccacc 161  Q
    ||||||||||  ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||   ||||||||||||    
T  22573325 tggagtagtactgccacaggtgggagtcgaagaaaggttttggaagaaatagaaaacacgcgtatgtagttttatcctatcatgt---tgttaacccacc 22573229  T
Q  162 aaaaactaatgataagaattacaaaggttcaatataataggattagaaacaggttaaatttat 224  Q
    ||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||| ||||    
T  22573228 aaaaactaaggataagaattacaaaggttcaataggataggattagaaacaggttaaacttat 22573166  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 9028642 - 9028729
Alignment:
Q  148 gttgttaacccaccaaaaactaatgataagaattacaaaggttcaatataataggattagaaacaggttaaatttattcttttctgtt 235  Q
    |||| ||||||| ||||||| || ||||||||||||||||||||||||  ||||||||| ||| ||||| || |||| ||||| ||||    
T  9028642 gttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggattaaaaataggtttaaattatccttttatgtt 9028729  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 59 - 232
Target Start/End: Original strand, 33235720 - 33235886
Alignment:
Q  59 cagtggagtagtatagccgcaggtgggagtcgaggaaaggttttggaagaaatagaaaacacgtgtatgtagttttattctatcatgttgttgttaaccc 158  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||    | |||||||||||||| ||||||   | ||| |||| |    
T  33235720 cagtggagtagtatagccgcaggtgggagtcaaagaaaggttttcgaagaaatagaaa----gcgtatgtagttttatcctatca---tattgctaactc 33235812  T
Q  159 accaaaaactaatgataagaattacaaaggttcaatataataggattagaaacaggttaaatttattcttttct 232  Q
    | |||||| ||| ||||| ||||||||||||||||||  |||||||||  ||||||||||| ||||| ||||||    
T  33235813 atcaaaaattaaggataataattacaaaggttcaataggataggattaagaacaggttaaacttattattttct 33235886  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 45413778 - 45413859
Alignment:
Q  148 gttgttaacccaccaaaaactaatgataagaattacaaaggttcaatataataggattagaaacaggttaaatttattcttt 229  Q
    |||| |||||||||||||||||| ||||| ||| |||||||||  |||  |||||||  |||| ||||| ||||||| ||||    
T  45413778 gttgctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggataggaaataggtttaatttatccttt 45413859  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 45792691 - 45792773
Alignment:
Q  153 taacccaccaaaaactaatgataagaattacaaaggttcaatataataggattagaaacaggttaaatttattcttttctgtt 235  Q
    |||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||||||| |||||| ||||  |||||||||    
T  45792691 taacccaccaaaaactaaggataagaattacaaaggctcaataggataggattagaaacatgttaaacttatcattttctgtt 45792773  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 19806764 - 19806845
Alignment:
Q  148 gttgttaacccaccaaaaactaatgataagaattacaaaggttcaatataataggattagaaacaggttaaatttattcttt 229  Q
    ||||||||||||||||||||||| ||| ||||  ||||||  | ||||  ||||||||||||| ||||| ||||||| ||||    
T  19806764 gttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagaaataggtttaatttatccttt 19806845  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 50004909 - 50004986
Alignment:
Q  153 taacccaccaaaaactaatgataagaattacaaaggttcaatataataggattagaaacaggttaaatttattctttt 230  Q
    |||||||||||||||||| ||||| ||| ||||||| | | ||  ||||||||||||| ||||| || |||| |||||    
T  50004909 taacccaccaaaaactaaggataaaaataacaaagggtgattaggataggattagaaataggtttaaattatcctttt 50004986  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 26793864 - 26793780
Alignment:
Q  148 gttgttaacccaccaaaaactaatgataagaattacaaaggttcaatataataggattagaaacaggttaaatttattcttttct 232  Q
    |||| ||||||||||||||||||  |||| ||| ||||||||| | ||  ||||||||||||| | ||| || |||| |||||||    
T  26793864 gttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatccttttct 26793780  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 7670479 - 7670408
Alignment:
Q  153 taacccaccaaaaactaatgataagaattacaaaggttcaatataataggattagaaacaggttaaatttat 224  Q
    |||||||||||||| ||| ||||||||||||||| | ||||||  |||||||||||||||||||||| ||||    
T  7670479 taacccaccaaaaattaaggataagaattacaaaagctcaataggataggattagaaacaggttaaacttat 7670408  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 39594743 - 39594667
Alignment:
Q  147 tgttgttaacccaccaaaaactaatgataagaattacaaaggttcaatataataggattagaaacaggttaaattta 223  Q
    ||||| ||||||| |||||||||| ||||| ||||||||||| | ||||| ||| |||||| || ||||| ||||||    
T  39594743 tgttgctaacccatcaaaaactaaggataaaaattacaaaggatgaatatgataagattagtaataggtttaattta 39594667  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 23318951 - 23319027
Alignment:
Q  153 taacccaccaaaaactaatgataagaattacaaaggttcaatataataggattagaaacaggttaaatttattcttt 229  Q
    ||||||| ||||||| || ||||| ||||||||||| ||||||  ||||||||| ||| ||||| || |||| ||||    
T  23318951 taacccatcaaaaaccaaggataaaaattacaaaggctcaataggataggattaaaaataggtttaaattatccttt 23319027  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 8547442 - 8547524
Alignment:
Q  147 tgttgttaacccaccaaaaactaatgataagaattacaaaggttcaatataataggattagaaacaggttaaatttattcttt 229  Q
    ||||| ||||||||||||||||||  |||| ||| ||||||| | ||||| ||| ||||||||| ||||| || |||| ||||    
T  8547442 tgttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatccttt 8547524  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 8573794 - 8573864
Alignment:
Q  146 ttgttgttaacccaccaaaaactaatgataagaattacaaaggttcaatataataggattagaaacaggtt 216  Q
    |||||| ||||||||||||||||||  |||| ||| ||||||| | ||||| ||| ||||||||| |||||    
T  8573794 ttgttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtt 8573864  T

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