View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19910_low_10 (Length: 274)

Name: NF19910_low_10
Description: NF19910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19910_low_10
NF19910_low_10
[»] chr3 (5 HSPs)
chr3 (1-264)||(47193463-47193726)
chr3 (129-263)||(9792564-9792698)
chr3 (89-156)||(47212255-47212322)
chr3 (26-147)||(26737017-26737138)
chr3 (107-147)||(26713862-26713902)
[»] chr7 (7 HSPs)
chr7 (123-264)||(6609317-6609458)
chr7 (123-264)||(6624663-6624804)
chr7 (86-200)||(21130440-21130554)
chr7 (89-165)||(18658605-18658681)
chr7 (89-156)||(29213017-29213084)
chr7 (86-140)||(21098712-21098766)
chr7 (86-200)||(21123312-21123426)
[»] chr4 (1 HSPs)
chr4 (86-147)||(39132235-39132296)
[»] chr1 (1 HSPs)
chr1 (103-140)||(11791111-11791148)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 47193726 - 47193463
Alignment:
Q  1 agcagaactatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193726 agcagaactatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttc 47193627  T
Q  101 acatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193626 acatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtg 47193527  T
Q  201 aattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193526 aattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatg 47193463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 263
Target Start/End: Complemental strand, 9792698 - 9792564
Alignment:
Q  129 actcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaaga 228  Q
    |||||||| |||||||||| |||||||||| |||| ||||| |||  ||||| |||||||||||||||| |||||||||||||||||||||  |||| ||    
T  9792698 actcttcaagtaaataagcgaaacctttagttgttgcaacaactatcttaaatctcttattccaatcaactgaattagaacatagattctcaactaatga 9792599  T
Q  229 accatgttctatatactcatagaccaaaagcctat 263  Q
    ||||||||| ||||||||||| |||||||| ||||    
T  9792598 accatgttccatatactcataaaccaaaagtctat 9792564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 47212255 - 47212322
Alignment:
Q  89 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 156  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  47212255 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatggatataagccaaaccttt 47212322  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 26737017 - 26737138
Alignment:
Q  26 ttcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattcca 125  Q
    |||||||| || || ||||||||||| |||||||| ||| || |||  | |||||  |  || ||||| || || | ||| ||||| |||| ||| ||||    
T  26737017 ttcaatagcttagacaaaccaaaatctgcaaccttaggtcgataatcagagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactcca 26737116  T
Q  126 aacactcttcatgtaaataagc 147  Q
    ||||||||||||||||||||||    
T  26737117 aacactcttcatgtaaataagc 26737138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 26713862 - 26713902
Alignment:
Q  107 caatgtaaaacccattccaaacactcttcatgtaaataagc 147  Q
    ||||| |||| ||| ||||||||||||||||||||||||||    
T  26713862 caatgcaaaatccactccaaacactcttcatgtaaataagc 26713902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 123 - 264
Target Start/End: Original strand, 6609317 - 6609458
Alignment:
Q  123 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 222  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6609317 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6609416  T
Q  223 taaagaaccatgttctatatactcatagaccaaaagcctatg 264  Q
    ||| ||||||||||| ||||||||||| |||| |||||||||    
T  6609417 taatgaaccatgttccatatactcataaaccagaagcctatg 6609458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 123 - 264
Target Start/End: Complemental strand, 6624804 - 6624663
Alignment:
Q  123 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 222  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6624804 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6624705  T
Q  223 taaagaaccatgttctatatactcatagaccaaaagcctatg 264  Q
    ||| |||||||||||  |||||||||| |||| |||||||||    
T  6624704 taatgaaccatgttccgtatactcataaaccagaagcctatg 6624663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 21130440 - 21130554
Alignment:
Q  86 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 185  Q
    ||||||||||| || | ||||||||| |||| |||||||||||| |||||||||| ||| || ||| || |||||||||| | ||| | || | |||| |    
T  21130440 atattttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagatatgctaaaactctagctgttcctaaagcaatatcataccttt 21130539  T
Q  186 tattccaatcaagtg 200  Q
    || ||||||||||||    
T  21130540 tagtccaatcaagtg 21130554  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 18658605 - 18658681
Alignment:
Q  89 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttcc 165  Q
    |||||||| || | ||||||||| |||| |||||||||||| |||||||||| |||||| | | |||||||||||||    
T  18658605 ttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcc 18658681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 29213017 - 29213084
Alignment:
Q  89 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 156  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||  | |||||||||||||||    
T  29213017 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcataaatataagccaaaccttt 29213084  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 21098766 - 21098712
Alignment:
Q  86 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgta 140  Q
    |||||||| || || | |||||||||||||| |||||||||||| ||||||||||    
T  21098766 atattttgcggctttatatcacaatgtaaaatccattccaaacattcttcatgta 21098712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 21123312 - 21123426
Alignment:
Q  86 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 185  Q
    ||||||||||| || | ||||||||| |||| ||| |||| ||| |||||||||| |||||| | | || |||||||||| | ||| | || | |||| |    
T  21123312 atattttgaggctttatatcacaatgcaaaatccactccatacattcttcatgtagataagcaagaactctagctgttcctaaagcaatatcataccttt 21123411  T
Q  186 tattccaatcaagtg 200  Q
    || ||||||||||||    
T  21123412 tactccaatcaagtg 21123426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 39132296 - 39132235
Alignment:
Q  86 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagc 147  Q
    ||||||||||| || | |||||||||||||| ||| |||||||| |||||||||| ||||||    
T  39132296 atattttgaggctttatatcacaatgtaaaatccactccaaacattcttcatgtagataagc 39132235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 11791111 - 11791148
Alignment:
Q  103 atcacaatgtaaaacccattccaaacactcttcatgta 140  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  11791111 atcacaatgcaaaacccattccaaacactcctcatgta 11791148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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