View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19910_low_15 (Length: 219)
Name: NF19910_low_15
Description: NF19910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19910_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 13949945 - 13949760
Alignment:
| Q |
16 |
aaaataaggagtatctttggatatgattacaaaataaaaatatagtatcttatgttatgatgctgattacgaaataaaaaactgtaaagtattcaaatca |
115 |
Q |
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| T |
13949945 |
aaaataaggagtatctttggatatgattacaaaataaaaatatagtatcttatgttatgatgctgattacgaaataaaaaactgtaaagtattcaaatca |
13949846 |
T |
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| Q |
116 |
catcnnnnnnnaaagtatcatcatatattaaacagattacctttttcaacaaatatttcacaattgttgtgattttaataatgcat |
201 |
Q |
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| T |
13949845 |
catcttttcttaaagtatgatcatatattaaacagattacctttttcaacaaatatttcacaattgttgtgattttaataatgcat |
13949760 |
T |
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Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 4037996 - 4038182
Alignment:
| Q |
16 |
aaaataaggagtatctttggata-tgattacaaaataaaaatatagtatcttatgttatgatgctgattacgaaataaaaaactgtaaagtattcaaatc |
114 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4037996 |
aaaataaggagtatctttggatactgattacaaaataaaaatatagtatcttatgttatgatgctgattacgaaataaaaaactgtaaagtattcaaatc |
4038095 |
T |
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| Q |
115 |
acatcnnnnnnnaaagtatcatcatatattaaacagattacctttttcaacaaatatttcacaattgttgtgattttaataatgcat |
201 |
Q |
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| T |
4038096 |
acatctttttttaaagtatcatcatatattaaacagattacctttttcaacaaatatttcacaattgttgtgattttaataatgcat |
4038182 |
T |
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