View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19910_low_2 (Length: 672)
Name: NF19910_low_2
Description: NF19910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19910_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 18 - 643
Target Start/End: Complemental strand, 12235122 - 12234495
Alignment:
| Q |
18 |
gaacaggtagtttacatggctctggtgggaacatttccatttaactccttcctttctggagtactctcttgcgtagggactgcagttttggctggtaagt |
117 |
Q |
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| T |
12235122 |
gaacaggtagtttacatggctctggtgggaacatttccatttaactccttcctttctggagtactctcttgcgtagggactgcagttttggctggtaagt |
12235023 |
T |
|
| Q |
118 |
gtcaatagtctattgcaatttgaaagctaaaatgttaatgttaagcacatttgtactctaatatacagagatttctaaacctacttgcaagttgaaacac |
217 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12235022 |
gtcaatagtctattgcaatttgaaagctaca-tgttaatgttaagcacatttgtactccaatatacagagatttctaaacctacttgcaagttgaaacac |
12234924 |
T |
|
| Q |
218 |
atgtattcgaacggggtttcagttttcatcttacttatctttgttatcatcgtttattttgaatcagtttgtctccgaatccaagtcaataaagagaaca |
317 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12234923 |
atgtatttgaacggggtttcagttttcatcgtacttatctttgttatcatcgtttattttgaatcagtttgtctccgaatccaagtcaataaagagaaca |
12234824 |
T |
|
| Q |
318 |
aggaattcaaggtaaacattattttcttgtttattttgaattttgttttgatgttacgagccaaattccaggcaatcattgtttaatttgacaaaacaaa |
417 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12234823 |
aggaattcaaggtaaacattgttttcttgtttattttgaattttgttttgatgttacgagccaaattccaggcaatcattgtttaatttgacaaaacaaa |
12234724 |
T |
|
| Q |
418 |
gtaaaaaggaaaggaaatgaagcagtaaaa---tgtctgcatattattttctccactagatatattcatactgataatttggtcctccatccttgtgcag |
514 |
Q |
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| T |
12234723 |
gtaaaaaggaaaggaaatgaagcagtaaaatgttgtctgcatattattttctccactagatatattcatactgataatttggtcctccatccttgtgcag |
12234624 |
T |
|
| Q |
515 |
gatcttgcgccggagcgtgcttttgctgattttgttctctgcaatgtggtgcttcacttggtgatcatgaacttccttggttaaatttgtttcgtgtgtt |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12234623 |
gatcttgcgccggagcgtgcttttgctgattttgttctctgcaatgtggtgcttcacttggtgatcatgaacttccttggttaaatttgtttcatgtgtt |
12234524 |
T |
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| Q |
615 |
tttgttgtttccaagagaaccgtcggata |
643 |
Q |
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| T |
12234523 |
tttgttgtttccaagagaaccgtcggata |
12234495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 6982595 - 6982499
Alignment:
| Q |
21 |
caggtagtttacatggctctggtgggaacatttccatttaactccttcctttctggagtactctcttgcgtagggactgcagttttggctggtaagt |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||||||||||||||| |
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| T |
6982595 |
caggtagtttacatggctttggtgggaacatttccattcaactccttcctgtcgggagtactttcttgcgttggaactgcagttttggctggtaagt |
6982499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 510 - 601
Target Start/End: Complemental strand, 6981960 - 6981869
Alignment:
| Q |
510 |
tgcaggatcttgcgccggagcgtgcttttgctgattttgttctctgcaatgtggtgcttcacttggtgatcatgaacttccttggttaaatt |
601 |
Q |
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||||||| |||| || |||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| |
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| T |
6981960 |
tgcaggacattgctcctgagcgtgcttttgcagattttgttctctgcaatgtggtgctccatttggtgatcatgaatttccttggttaaatt |
6981869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 6982288 - 6982237
Alignment:
| Q |
282 |
cagtttgtctccgaatccaagtcaataaagagaacaaggaattcaaggtaaa |
333 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
6982288 |
cagtttgtctccggatccaagtgaataaagagaacaaggaattcaaggtaaa |
6982237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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