View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19910_low_20 (Length: 206)
Name: NF19910_low_20
Description: NF19910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19910_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 40890712 - 40890777
Alignment:
| Q |
125 |
ggcaagccaaacatgccgtccaatgtcttccaaaaaatcctttaaaacaacaggaacattcaagtt |
190 |
Q |
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| T |
40890712 |
ggcaagccaaacatgccgtccaatgtcttccaaaaaatcctttaaaacaacaggaacattcaagtt |
40890777 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 40890663 - 40890699
Alignment:
| Q |
71 |
ctacaagattaataaagcatgtcaataaaccattgac |
107 |
Q |
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| T |
40890663 |
ctacaagattaataaagcatgtcaataaaccattgac |
40890699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 30621282 - 30621317
Alignment:
| Q |
72 |
tacaagattaataaagcatgtcaataaaccattgac |
107 |
Q |
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| T |
30621282 |
tacaagattaataaagcatgtcaataaaccattgac |
30621317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 106
Target Start/End: Complemental strand, 38286224 - 38286196
Alignment:
| Q |
78 |
attaataaagcatgtcaataaaccattga |
106 |
Q |
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| T |
38286224 |
attaataaagcatgtcaataaaccattga |
38286196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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