View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19910_low_3 (Length: 568)
Name: NF19910_low_3
Description: NF19910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19910_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 157 - 554
Target Start/End: Original strand, 37738035 - 37738431
Alignment:
| Q |
157 |
tatatataagcattcttttgactaaaatttctcttaaaatataaatgctttttcaaattactacatacaagggcggagcgattagttgagtgagaaaagg |
256 |
Q |
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| T |
37738035 |
tatatataagcattcttttgactaaaaattctctcaaaatataaatgttttttcaaattactacatacaagggcggagcgattagttgagtgagaaaagg |
37738134 |
T |
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| Q |
257 |
atgggttgaaatgagttatccctgatcttaatctggctccaaatttttaacccttaatttatcataagactcgaatgtgttctgcttgcaaattaagatt |
356 |
Q |
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| T |
37738135 |
atgggttggaatgaattatccctgatcttaatctggctccaaatttttaacccttaatttatcataagactcgaatatgttctgcttgcaaattaagatt |
37738234 |
T |
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| Q |
357 |
tggtctatttaacaatttaagtaggacaagtttttctccttttgcagtaacatacgttgtgatgggagcatgaaacatatttgggctatacaattaccaa |
456 |
Q |
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| T |
37738235 |
tggtctatttaacaatttaagtaggacaagtttttctccttttgcagtaacatacgttgtgatgggagcatgaaacatatttgggctat-taattaccaa |
37738333 |
T |
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| Q |
457 |
cctggtactttaattggctgccctaaataagagatagaccgccatcaccaaaccaaactccaattatcccactttgagcaattggaacttgaaaaaac |
554 |
Q |
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| T |
37738334 |
cctggtactttaattggctgccctaaataagagatagaccgccatcacccaaccaaactccaattatcccactttgagcaattggaacttgaaaaaac |
37738431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 37737849 - 37737949
Alignment:
| Q |
12 |
aggtgttccgtatttatgcagcatcttatttgtattgtttcttctttaccgcgagatctaatgtgtcttgcattttcttgtcaagaataaatttgctatt |
111 |
Q |
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| T |
37737849 |
aggtgttctgtatatatgcagcatcttatttgtattgtttcttctttaccgcgagatttaatgtgtcttgcattttcttgtcaagaataaatttgctatt |
37737948 |
T |
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| Q |
112 |
c |
112 |
Q |
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| T |
37737949 |
c |
37737949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 34087941 - 34088011
Alignment:
| Q |
41 |
ttgtattgtttcttctttaccgcgagatctaatgtgtcttgcattttcttgtcaagaataaatttgctatt |
111 |
Q |
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| T |
34087941 |
ttgtattgtttcttcttttccgcgagttttaatgtgccttgaattttctcgacatgaataaatttgctatt |
34088011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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