View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19910_low_6 (Length: 396)
Name: NF19910_low_6
Description: NF19910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19910_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 31639970 - 31639575
Alignment:
| Q |
1 |
atcccacaagcaagtttgaggttgcatcagtgatctctggcaatctttcagatacaagtttttgcattgagaaaggatattttccaaagataagaggatc |
100 |
Q |
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| T |
31639970 |
atcccacaagcaagtttgaggttgcatcagtgatctctggcaatctttcagatacaagtttttgcattgagaaaggatattttccaaagataagaggatc |
31639871 |
T |
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| Q |
101 |
aaggaacctgattcacattagtgttatgttacacatcttttatgtggaagatgagttcttactttcttagttgttacaaattaagctatcaaactttgtg |
200 |
Q |
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| T |
31639870 |
aaggaacctgattcacattagtgttatgttacacatcttttatgtggaagatgagttcttactttcttagttgttacaaattaagctatcaaactttgtg |
31639771 |
T |
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| Q |
201 |
ataattataattatgttagtatgagtaaggttaccatccaagggaaaagtccatagctctagctgcagcttctttgtcttcatcaagttcagttataggt |
300 |
Q |
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| T |
31639770 |
ataattataattatgttagtatgagtaaggttaccatccaagggaaaagtccatagctctagctgctgcttctttgtcttcatcaagttcagttataggt |
31639671 |
T |
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| Q |
301 |
tcataccaaacagcatctagtgctatccctattttacctccttgttgttcctgtattatccatcaaataacacaaatattattgatattttcagct |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31639670 |
tcataccaaacagcatctagtgctatccctattttacctccttgtttttcctggattatccatcaaatgacacaaatattattgatattttcagct |
31639575 |
T |
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