View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19910_low_8 (Length: 318)
Name: NF19910_low_8
Description: NF19910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19910_low_8 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 97 - 301
Target Start/End: Complemental strand, 9536086 - 9535881
Alignment:
| Q |
97 |
aggaagttcgctagaggatgggatgaatagcgtttttcgtttt-caaaattttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgttt |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9536086 |
aggaagttcgctagaggatgggatgaatagcgtttttcgtttttcaattttttttaggaatacatggattaaaaagagtatgactattgaatctgtgttt |
9535987 |
T |
|
| Q |
196 |
gatgatgataaaaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaatttaaatatttaatcttttagaacaaatcaacaatcaatat |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9535986 |
gatgatgataaaaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaatttaaatatttaatcttttagaacaaatcaacaatcaatac |
9535887 |
T |
|
| Q |
296 |
aaatac |
301 |
Q |
| |
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|||||| |
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| T |
9535886 |
aaatac |
9535881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9536149 - 9536084
Alignment:
| Q |
1 |
catgaaagcagctggggcgttttataaccgagtgtccaaataggaaaggcaaaagtgggactgagg |
66 |
Q |
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| T |
9536149 |
catgaaagcagctggggcattttataaccgagtgtccaaataggaaaggcaaaagtgggactgagg |
9536084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 294
Target Start/End: Complemental strand, 27272356 - 27272207
Alignment:
| Q |
147 |
ttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtg |
245 |
Q |
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| T |
27272356 |
ttttgcaaaagcgtggattaacaagagtatgactattgaatttgtgtgcgacaatgataacaaaattaaaacaatgaaaatcaaataatattcaaagctg |
27272257 |
T |
|
| Q |
246 |
aattgaga-atttaaatatttaatcttttagaacaaatcaacaatcaata |
294 |
Q |
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| T |
27272256 |
aattgagaggttcaaataatgaatcttatgaaacaaatcaataatcaata |
27272207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 74 - 250
Target Start/End: Complemental strand, 16192330 - 16192154
Alignment:
| Q |
74 |
tgttagtctatatgacaaactataggaagttcgctagaggatgggatgaatagcgtttttcgtt-ttcaaaattttttgcgaaaacatggattaaaaaga |
172 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||||| || | |||||| ||||||||| ||||||| |||||| ||||| |||||||| |||| |
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| T |
16192330 |
tgttagtctatatgacaaactaa--gaagtgcgctagaggggggtgtcaatagcatttttcgttcttcaaaaggttttgcaaaaacgtggattaacaaga |
16192233 |
T |
|
| Q |
173 |
gtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattg |
250 |
Q |
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|||||||||| |||| |||| | |||||||||| |||| || |||||||||||||||||| |||||||| |||||||| |
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| T |
16192232 |
gtatgactatcgaatttgtgcgtaatgatgataacaaaattaggacaatgaatatcaaataagattcaaatgtgaattg |
16192154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 294
Target Start/End: Complemental strand, 17350117 - 17349939
Alignment:
| Q |
120 |
tgaatagcgtttttcgtttt-caaaattttttgcgaaaacatggattaa-aaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaaga |
216 |
Q |
| |
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|||||| ||||||||||||| ||||| |||||| ||| | |||||||| |||||||||||||||||||| |||| || ||||||||| |||| ||||| |
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| T |
17350117 |
tgaataacgtttttcgtttttcaaaagattttgcaaaagcgtggattaacaaagagtatgactattgaatttgtgcttagtgatgataacaaaattaaga |
17350018 |
T |
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| Q |
217 |
caatgaatatcaaatatgattcaaaggtgaattgagaa-tttaaatatttaatcttttagaacaaatcaacaatcaata |
294 |
Q |
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||||||| || || || ||||||||||||||||||||| || ||||| | | |||| || | |||||||||||||||| |
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| T |
17350017 |
caatgaaaataaactaagattcaaaggtgaattgagaagttcaaataatgactcttataaagaaaatcaacaatcaata |
17349939 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 136 - 271
Target Start/End: Original strand, 6104 - 6241
Alignment:
| Q |
136 |
ttttcaaaattttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatg |
234 |
Q |
| |
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||||||||| |||||||||||| |||||| | || | |||||||||||||| |||| |||||||||||| |||| |||||||||||||| |||||| | |
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| T |
6104 |
ttttcaaaaggttttgcgaaaacgtggattcacaaaactatgactattgaatttgtgcatgatgatgataacaaaattaagacaatgaataacaaataag |
6203 |
T |
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| Q |
235 |
attcaaaggtgaattgaga-atttaaatatttaatctt |
271 |
Q |
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|||||||| | |||||||| ||||||||| | |||||| |
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| T |
6204 |
attcaaagctaaattgagagatttaaataatgaatctt |
6241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 23142308 - 23142442
Alignment:
| Q |
120 |
tgaatagcgtttttcg--ttttcaaaattttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaaga |
216 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||| | |||||||| | |||| || |||||||| |||| |||||||||||| |||| ||||| |
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| T |
23142308 |
tgaatagcgtttttcggtttttaaaaggtttttgcgaaagcgtggattaactaaagtacgattattgaatttgtgcgtgatgatgataacaaaattaaga |
23142407 |
T |
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| Q |
217 |
caatgaatatcaaatatgattcaaaggtgaattga |
251 |
Q |
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|||||||||||||||| ||||||||| |||||||| |
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| T |
23142408 |
caatgaatatcaaataagattcaaagttgaattga |
23142442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 3462253 - 3462372
Alignment:
| Q |
136 |
ttttcaaaattttttgcgaaaacatggattaaaaagagtatgacta-ttgaatctgtgtttgatgatgataaaaaact-aagacaatgaatatcaaatat |
233 |
Q |
| |
|
||||||||| |||||||||| | | |||||| ||||||||||||| ||| || |||| |||||||||||| ||| | |||||||||||||||||||| |
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| T |
3462253 |
ttttcaaaaggttttgcgaaagcgtagattaacaagagtatgactaattgcatttgtgcgtgatgatgataacaaaatcaagacaatgaatatcaaataa |
3462352 |
T |
|
| Q |
234 |
gattcaaaggtgaattgaga |
253 |
Q |
| |
|
|||| ||||||||||||||| |
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| T |
3462353 |
gatttaaaggtgaattgaga |
3462372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 301
Target Start/End: Complemental strand, 17279294 - 17279073
Alignment:
| Q |
74 |
tgttagtctatatgacaaactataggaagttcgctagaggatgggatgaatagcgttttt-cgttttcaaaattttttgcgaaaacatggattaaaaaga |
172 |
Q |
| |
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||||||| |||||||||||||| |||||| ||||||| | ||| |||||| ||||||| | |||| |||| |||| ||||| | ||||| | || | |
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| T |
17279294 |
tgttagtgtatatgacaaacta--ggaagtgcgctagatg--ggggtgaataacgttttttcatttttaaaaggttttacgaaagcttggataaccaaaa |
17279199 |
T |
|
| Q |
173 |
gtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattgaga-atttaaatatttaatct |
270 |
Q |
| |
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||||||||||||||| ||||| || ||||||||| |||| |||||||||| |||||||||||||| |||||||||| || ||||| | ||||| |
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|
| T |
17279198 |
gtatgactattgaatttgtgtgtgttgatgataacaaaattaagacaatg-----ttaatatgattcaaagctgaattgagaggttcaaataatgaatct |
17279104 |
T |
|
| Q |
271 |
tttagaacaaatcaacaatcaatataaatac |
301 |
Q |
| |
|
| | || || |||||||||||||| |||||| |
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|
| T |
17279103 |
tatggagcatatcaacaatcaatacaaatac |
17279073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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