View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19910_low_9 (Length: 292)
Name: NF19910_low_9
Description: NF19910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19910_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 275
Target Start/End: Original strand, 41333404 - 41333624
Alignment:
| Q |
60 |
cctcttgatgaattactttatgatttagattgaaaagttcccaatggaatgaaataataatgaagaacttgatatgactgag--tcatt----------g |
147 |
Q |
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| T |
41333404 |
cctcttgctgaattattttatgaatttgattgaaagcttcccaatggaatgaa----taatgaagaacttgatatgattgagagtcatttgggcttacag |
41333499 |
T |
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| Q |
148 |
tccgaagaaaacacgacccatatatgtttggttcctattccaggtcgtctacgatattttatattgtctaagcaaacaagttcacaatgtggttggtttt |
247 |
Q |
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| T |
41333500 |
tccaaagaaaacacgacccatat--gtttggttcctattactggtcgtctacgatattt-atattgtctaagcaaacaagttcacaatgtggttagtttt |
41333596 |
T |
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| Q |
248 |
cttatactactttcagcaaggtgtatga |
275 |
Q |
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| T |
41333597 |
cttatactactttcagcaaggtgtatga |
41333624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 41329487 - 41329583
Alignment:
| Q |
16 |
atatgtgtccaagcattgcatttggtttagccaatgttgaactacctcttgatgaattactttatgatttagattgaaaagttcccaatggaatgaa |
112 |
Q |
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| T |
41329487 |
atatgtgtccaagcattgcatttggtttagccaatgttgaactgcgtcttgctgaattactttatgactttgattgaaagctttccaatggaatgaa |
41329583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 41311862 - 41311927
Alignment:
| Q |
209 |
tattgtctaagcaaacaagttcacaatgtggttggttttcttatactactttcagcaaggtgtatga |
275 |
Q |
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| T |
41311862 |
tattgtctaagcaaacaagttcacaatgtggttaattttcttata-tacttttagcaaggtgtatga |
41311927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 41311682 - 41311759
Alignment:
| Q |
60 |
cctcttgatgaattactttatgatttagattgaaaagttcccaatggaatgaaataataatgaagaacttgatatgactgag |
141 |
Q |
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| T |
41311682 |
cctcttgctgaattattttatgaatttgattgaaagcttcccaatggaatg----aataatgaagaacttgatatgactgag |
41311759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 41305447 - 41305540
Alignment:
| Q |
18 |
atgtgtccaagcattgcatttggtttagccaatgttgaactacctcttgatgaattactttatgatttagattgaaaagttcccaatggaatga |
111 |
Q |
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| T |
41305447 |
atgtgtccgggcattgcatttgccttatcaaatgttgaacttcctcttgctgaattactttataactttgattggaagcttcccaacggaatga |
41305540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 41317135 - 41317259
Alignment:
| Q |
18 |
atgtgtccaagcattgcatttggtttagccaatgttgaactacctcttgatgaattactttatgatttagattgaaaagttcccaatggaatgaaataat |
117 |
Q |
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| T |
41317135 |
atgtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttgctaagttactttatcactttgattggaagcttcccaatggaatgaag---- |
41317230 |
T |
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| Q |
118 |
aatgaagaacttgatatgactgagtcatt |
146 |
Q |
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| T |
41317231 |
aatgaagaattggatatgactgagtcatt |
41317259 |
T |
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