View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19911_high_1 (Length: 659)
Name: NF19911_high_1
Description: NF19911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19911_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 17 - 643
Target Start/End: Original strand, 42082930 - 42083534
Alignment:
| Q |
17 |
acttcttgtcaataatttgtggaaatttcattctgaatgtttcgagataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtca |
116 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42082930 |
acttcttgtcaataatttgtggtaagttcattctgaatgtttcgagataccgtatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtca |
42083029 |
T |
|
| Q |
117 |
gcaccctaagtgtaccgacatacataaacatctcagcaatgggtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattca |
216 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42083030 |
gcaccctaagtgtaccgacatacagaaacatctcagc----------------------acctgttttcacaaccaccaaaaggaagaaaacaatattca |
42083107 |
T |
|
| Q |
217 |
gttctagatgatacaacaaacacaactgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagata |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42083108 |
gttctagatgatacaacaaacacaactgagacattgacatcgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagata |
42083207 |
T |
|
| Q |
317 |
cgtctttcttgaatatgaagcatcggtgctacatagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgactta |
416 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42083208 |
cgtctttctttaatatgaagcatcggtgctgcatagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgactta |
42083307 |
T |
|
| Q |
417 |
cgtagagtttatctggtttctcactaacacttatgatttggcctcttcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaac |
516 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42083308 |
cgtagagtttatctggtttctcaccaacacttatgatttggcctcttcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaac |
42083407 |
T |
|
| Q |
517 |
ttcaagtttcattgtaggttcaagcattaatggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaa |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42083408 |
ttcaagtttcattgtaggttcaagcattaatggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaa |
42083507 |
T |
|
| Q |
617 |
tccacatcatggtaagtactatccaca |
643 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
42083508 |
tccacatcatggtaagtactatccaca |
42083534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 247 - 643
Target Start/End: Original strand, 42086665 - 42087051
Alignment:
| Q |
247 |
acattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgct |
346 |
Q |
| |
|
||||||||| | |||| ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||| || ||||||||| ||| |||| |
|
|
| T |
42086665 |
acattgacatcaataacaattttaaaaatggatgaaattgaatgtaactacaagtattggacaccagatacgtcatt----aatatgaagtgtcg-tgct |
42086759 |
T |
|
| Q |
347 |
acatagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacac |
446 |
Q |
| |
|
||||||||||||||| || | ||| |||||||||| ||| ||||||| || | ||||||||||||||| | |||| | ||||||| |||| || || |
|
|
| T |
42086760 |
acatagctttcaaatcat----accttcaaatttaatatatgcacatgga-gaaagggttttgtgacttaccttgagtccacctggtttgtcaccaaaac |
42086854 |
T |
|
| Q |
447 |
ttatgatttggcctcttcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaa |
546 |
Q |
| |
|
| ||||||||||||||||| | |||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
42086855 |
tattgatttggcctcttcttgagttgagatcaccaattacatctcctaaatgttcttcaggagtaacaacttcaactttcattataggttcaagcattct |
42086954 |
T |
|
| Q |
547 |
tggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtactatccaca |
643 |
Q |
| |
|
||| ||||||||| ||||||||| ||||||| ||||||||||||||||| ||| |||||||||||| ||||||||||||| || ||||||| |
|
|
| T |
42086955 |
cggtccggcttttcttattccttcccgaaaagctcctcttgctgccaactggaaagccaacacacttgaatctacatcatggtaagaaccatccaca |
42087051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 42086427 - 42086611
Alignment:
| Q |
32 |
tttgtggaaatttcattctgaatgtttcgagataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtac |
131 |
Q |
| |
|
||||||| || || ||||||||||| | ||| ||||| ||||||| || | || ||||| ||||| |||||||| |||| ||||| | | || ||||||| |
|
|
| T |
42086427 |
tttgtggcaagttgattctgaatgtgttgaggtaccacatcaaacatggctaattgcatagagtatgatgcacgaccctttgtcatccctcttagtgtac |
42086526 |
T |
|
| Q |
132 |
cgacatacataaacatctcagcaatgggtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttcta |
222 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
42086527 |
tgacatactgaaacatctcagcaagaggtactaatgaatcaaccacctgtttt------caccaaaaggaagaaaacaatgttcagttcta |
42086611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 631
Target Start/End: Complemental strand, 29242508 - 29242409
Alignment:
| Q |
531 |
taggttcaagcattaatggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggta |
630 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||| |||| || | |||||||||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
29242508 |
taggttcaagcattttcggtccggcttttcttattccttcttgaaaaactcgtcttgctgccaactgaaa-gccaacacacttgaatccacatcatggta |
29242410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 22284533 - 22284482
Alignment:
| Q |
258 |
gataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggaca |
309 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| || |||||||||| |
|
|
| T |
22284533 |
gataataatttgaaaaatggaaaaatttgaatgtaactgcatgtgtcggaca |
22284482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 37603915 - 37603961
Alignment:
| Q |
252 |
gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca |
298 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
37603915 |
gacaccgataacaatttgaaaaatggaagaaattgaatgtaaataca |
37603961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 3262022 - 3262086
Alignment:
| Q |
241 |
actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcg |
305 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
3262022 |
actgacacattgacatttataataattttcaaaatagaagaaattgaaagtaactacatgtgtcg |
3262086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 6933139 - 6933194
Alignment:
| Q |
241 |
actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaacta |
296 |
Q |
| |
|
||||| |||| |||| ||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
6933139 |
actgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaagtaacta |
6933194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 18626931 - 18626976
Alignment:
| Q |
258 |
gataataatttgaaaaatggaagaaattgaatgtaactacaagtgt |
303 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| |||||||| |||| |
|
|
| T |
18626931 |
gataataatttgaaaactggaagaaactgaatataactacatgtgt |
18626976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 30922528 - 30922574
Alignment:
| Q |
252 |
gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca |
298 |
Q |
| |
|
||||| |||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
30922528 |
gacaatgataataattagaaaaatgcaataaattgaatgtaactaca |
30922574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 8217086 - 8217034
Alignment:
| Q |
247 |
acattgacaacgataataatttga-aaaatggaagaaattgaatgtaactaca |
298 |
Q |
| |
|
|||| ||||||||||||||||| | ||||| |||| ||||||||||||||||| |
|
|
| T |
8217086 |
acatagacaacgataataattttagaaaatagaaggaattgaatgtaactaca |
8217034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 19629033 - 19629069
Alignment:
| Q |
258 |
gataataatttgaaaaatggaagaaattgaatgtaac |
294 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
19629033 |
gataatactttgaaaaatggaagtaattgaatgtaac |
19629069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University