View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19911_high_2 (Length: 472)
Name: NF19911_high_2
Description: NF19911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19911_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 31 - 455
Target Start/End: Complemental strand, 47423164 - 47422729
Alignment:
| Q |
31 |
tgggacaagtaaacaaattcaaaaatatattttctcaccggctaattcactgattgcatgataaacatgatgt-----------------ttatactacc |
113 |
Q |
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| T |
47423164 |
tgggacaagtaaacaaattcaaaaatatattttctcaccggctaattcactgattgcatgataaacatgatgtatcattcttaatcatgtttatactacc |
47423065 |
T |
|
| Q |
114 |
ccattggagaatcagaagactgagcttggggtggatcaattatttttcctgctgctgctgcttattatacaaacaactgagttgatgaaaataaggacaa |
213 |
Q |
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| T |
47423064 |
ccattggagaatcagaagactgagcttggggtggatcaattatttttcctgctgctg------attatacaaagaactgagttgatgaaaataaggacaa |
47422971 |
T |
|
| Q |
214 |
gtcctagaatccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttg |
313 |
Q |
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| T |
47422970 |
gtcctagaatccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttg |
47422871 |
T |
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| Q |
314 |
cacttctcttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttattactatttccttcaacattattgttgcttctgtttat |
413 |
Q |
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| T |
47422870 |
cgcttctcttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttattactatttccttcaacattattgttgcttctgtttat |
47422771 |
T |
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| Q |
414 |
tacacttgtagtagacttgaggtttatgagtgccaacacttc |
455 |
Q |
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| T |
47422770 |
tacacttgtagtagacttgaggtttatgagtgccaacacttc |
47422729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 362
Target Start/End: Original strand, 36127406 - 36127513
Alignment:
| Q |
255 |
atcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttgcacttctcttgtatcccaactcaaacatcccttcagagatt |
354 |
Q |
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| T |
36127406 |
atcctttgtttttctgaaatacttgttgatattctcccacttctctttgcatctctttgcacttctcttgtatcctaactccaacattccttgtgaaatt |
36127505 |
T |
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| Q |
355 |
ctctccca |
362 |
Q |
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| T |
36127506 |
ctctccca |
36127513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 12683339 - 12683295
Alignment:
| Q |
271 |
aaatacttatttatgttttcccatttttctttacacctctttgca |
315 |
Q |
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| T |
12683339 |
aaatacttgttaatgttttcccatttctctttgcacctctttgca |
12683295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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