View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19911_high_5 (Length: 354)
Name: NF19911_high_5
Description: NF19911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19911_high_5 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 49164927 - 49165280
Alignment:
| Q |
1 |
cccttcaggtcttggatgatgagagaacatggattgttaaatattgcctgagaaaaatgagtaacggatggaaaacatttgtatctgacaataatttgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49164927 |
cccttcaggtcttggatgatgagagaacatggattgttaaatattgtctgagaaaaatgagtaacggatggaaaacatttgtatctgacaataatttgaa |
49165026 |
T |
|
| Q |
101 |
attgggagatgtttgcctttttgagatgatcaatagcaaatcctatgcttttaaagtactaatttttcgagtcgacgaagaacaacattcccttccacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49165027 |
attgggagatgtttgcctttttgagatgatcaatagcaaatcctatgcttttaaagtactaatttttcgagtcgacgaagaacaacattcccttccacca |
49165126 |
T |
|
| Q |
201 |
caaggtaattcaagatggtttcttcccttaaagttattagtaatcttttggatctgcatgatcatgattatatttttcatcctttgaatcagttcatgga |
300 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49165127 |
caaggtaatccaagagggtttcttcccttaaagttattagtaatcttttggatctgcatgatcatgattatatttttcatcctttgaatcagttcatgga |
49165226 |
T |
|
| Q |
301 |
gatggagttaactggttagaaactgcaggaatcacagaagttaaaagtaaaact |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49165227 |
gatggagttaactggttagaaactgcaggaatcacagaagttaaaagtaaaact |
49165280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 66 - 354
Target Start/End: Original strand, 43751436 - 43751719
Alignment:
| Q |
66 |
ggatggaaaacatttgtatctgacaataatttgaaattgggagatgtttgcctttttgagatgatcaatagcaaatcctatgcttttaaagtactaattt |
165 |
Q |
| |
|
|||||||| | ||||| || ||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||| | ||||| |||||||||||||||| |
|
|
| T |
43751436 |
ggatggaagaaatttgcatttgataataatttgaaagtgggagatgtttgtctttttgagatgatcaaaagcaatgcttatgcctttaaagtactaattt |
43751535 |
T |
|
| Q |
166 |
ttcgagtcgacgaagaacaacattcccttccaccacaaggtaattcaagatggtttcttcccttaaagttattagtaatcttttggatctgcatgatcat |
265 |
Q |
| |
|
||||| | | ||||| |||||||||||||||||||||||||||| || ||||| || | || ||||||||| | | || | |||||| | || || |
|
|
| T |
43751536 |
ttcgactaggcgaag---aacattcccttccaccacaaggtaattctagttggtt--tttcttttaagttattactctttttgttgatctgaagaataat |
43751630 |
T |
|
| Q |
266 |
gattatatttttcatcctttgaatcagttcatggagatggagttaactggttagaaactgcaggaatcacagaagttaaaagtaaaact |
354 |
Q |
| |
|
| ||||| ||||| |||||||||||||||||||||||||||||||| ||| | ||||| ||| ||||| | | |||| || |||||||| |
|
|
| T |
43751631 |
ggttatacttttcgtcctttgaatcagttcatggagatggagttaattgggttgaaacagcaagaatccctggagttgaatgtaaaact |
43751719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University