View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19911_high_7 (Length: 313)
Name: NF19911_high_7
Description: NF19911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19911_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 40332401 - 40332278
Alignment:
| Q |
167 |
gtaatccaaagtgtcaaattaaagggtttcaacatgaaagtgaaacaaattacaatgaaaataaaaattaaacaatttaagcaacaatagattcaaccaa |
266 |
Q |
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| T |
40332401 |
gtaatccaaagtgtc-----aaagggtttcaacatgaaagtgaaacaaattacaatgaaaattaaaattaaacaatttaagcaacaatatattcaaccaa |
40332307 |
T |
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| Q |
267 |
gaacaaattttagaacttatgtgtaatgc |
295 |
Q |
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| T |
40332306 |
gaacaaattttagaacttatgtgtaatgc |
40332278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 40332538 - 40332456
Alignment:
| Q |
13 |
aatataattacacagtacatttacacctccaaatattattcagaatttgaagtttacatgtgaaggtatcaaaatgtaacacc |
95 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40332538 |
aatataattacacagtacatttacacttccaaatattattcagaatttgaagtttacatgtgaaagtatcaaaatgtaacacc |
40332456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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