View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19911_high_8 (Length: 302)
Name: NF19911_high_8
Description: NF19911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19911_high_8 |
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| [»] scaffold0369 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 18648554 - 18648847
Alignment:
| Q |
1 |
ttttcaattcaatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttcttaacatggtatcattcgctgtgtaaacgatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18648554 |
ttttcaattcaatgagaataatttccattcacatatttctgttcttctttatatgaattttacctttcttaacatggtatcattcgctgtgtaaacgatc |
18648653 |
T |
|
| Q |
101 |
taagttttgcttccgttatttgtcatgccgcctcgtttggctcctgttcctccaattgatccttccatggatcaaaccagtcccttcttcgtgcatccca |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18648654 |
taagtttcgcttccgttatttgtcatgccgcctcgtttggctcctgttcctccaattgatccttccatggatcaaaccagtcccttcttcgtgcatccta |
18648753 |
T |
|
| Q |
201 |
gtgacagtccttcttccgtcacggttactccagtactttccggctccaattatcatacatgggtctgctctcaattgatgcatatacctttgct |
294 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18648754 |
gtgacggtccttcttccgtcacggttactccagtactttccggctccaattatcatacatgggtctgctctcaattgatgcatatacctttgct |
18648847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 15535106 - 15535361
Alignment:
| Q |
8 |
ttcaatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttcttaacatggtatcattcgctgtgtaaacgatctaagttt |
107 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15535106 |
ttcaatgagaataatttccattcacatatctctgttcttctttatatgaattttacctttcttaacatggtatcattcgttgtgtaaacgatctaagttt |
15535205 |
T |
|
| Q |
108 |
tgcttccgttatttgtcatgccgcctcgtttggctcctgttcctccaattgatccttccatggatcaaaccagtcccttcttcgtgcatcccagtgacag |
207 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
15535206 |
cgcttccgttatttgtcatgccacctcgtttggctcctgctcctccaattgatccttccatggatcaaaccagtcccttcatcgtgcatcccagtgacgg |
15535305 |
T |
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| Q |
208 |
tccttcttccgtcacggttactccagtactttccggctccaattatcatacatggg |
263 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15535306 |
tccttcttctgtcacggttactccagtactttccggctccaattatcatacatggg |
15535361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 15538580 - 15538647
Alignment:
| Q |
8 |
ttcaatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttcttaacat |
75 |
Q |
| |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
15538580 |
ttcaatgagaataatttccattcacatatctctgttcttctttatatgaattttacctttcttaacat |
15538647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 17384728 - 17384990
Alignment:
| Q |
1 |
ttttcaat-tcaatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttcttaacatggtatcattcgctgtgtaaacgat |
99 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17384728 |
ttttcaatctcaatgagaataatttccattcacatatttctgttcttctttatatgaattttacctttcttaacatggtatcaga-gctgtgtaaacgat |
17384826 |
T |
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| Q |
100 |
ctaagttttgcttccgttatttgtcatgccgcctcgtttggctcctgttcctccaattgatccttccatggatcaaaccagtcccttcttcgtgcatccc |
199 |
Q |
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| T |
17384827 |
ctaagtttcgcttccgttatttgtcatgccgcctcgtttggctcctactcctccaattgatccttccatggatcaaaccagtcccttcttcgtgcatccc |
17384926 |
T |
|
| Q |
200 |
agtgacagtccttcttccgtcacggttactccagtactttccggctccaattatcatacatggg |
263 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17384927 |
agtgacggtccttcttccgtcacggttactccggtactttccggctccaattatcatacatggg |
17384990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17389444 - 17389518
Alignment:
| Q |
1 |
ttttcaat-tcaatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttcttaaca |
74 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17389444 |
ttttcaatctcaatgagaataatttccattcacatatttctgttcttctttatatgaattttacctttcttaaca |
17389518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 31409592 - 31409690
Alignment:
| Q |
1 |
ttttcaattcaatgagaataatttccattcacatatttatgtt-cttctttatatgaattttacctttcttaacatggtatcattcgctgtgtaaacga |
98 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||||||| | | |||||||||||||||||| || |||||||| |
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| T |
31409592 |
ttttcaattcaatgagaataattttcattcacatatttttttttcttctttatatgaattttacttcttttaacatggtatcattcgatgcgtaaacga |
31409690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0369 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0369
Description:
Target: scaffold0369; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 13650 - 13577
Alignment:
| Q |
1 |
ttttcaattcaatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttcttaaca |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13650 |
ttttcaattcaatgagaataatttccattcacatatttctgttcttctttatatgaattttacctttcttaaca |
13577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 31378344 - 31378278
Alignment:
| Q |
8 |
ttcaatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttcttaaca |
74 |
Q |
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|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
31378344 |
ttcaatgagaataatttccattcacatatttctattcttctttatatgaattttacctttcttaaca |
31378278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 7222316 - 7222421
Alignment:
| Q |
137 |
ttggctcctgttcctccaattgatccttccatggatcaaaccagtcccttcttcgtgcatcccagtgacagtccttcttccgtcacggttactccagtac |
236 |
Q |
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||||||| ||||||| | |||| ||||| || ||||||||| ||||||||||| ||||| || || |||||||||||||| | |||||||| || | |
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| T |
7222316 |
ttggctcatgttcctacggttgacccttctctgcatcaaaccacacccttcttcgttcatccgagcgatggtccttcttccgtctctgttactccggttc |
7222415 |
T |
|
| Q |
237 |
tttccg |
242 |
Q |
| |
|
|||||| |
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|
| T |
7222416 |
tttccg |
7222421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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