View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19911_low_11 (Length: 250)
Name: NF19911_low_11
Description: NF19911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19911_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 31714327 - 31714537
Alignment:
| Q |
1 |
aaaggctcttgccaaatcattcccacaaatggaccgcactgtgtttgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31714327 |
aaaggctcttgccaaatcattcccacaattagagtgcactgtgtttgatcttccacatgttgttgatggcttgcaaggaggtgataacttaaactatgtt |
31714426 |
T |
|
| Q |
101 |
ggtggagacatgtttgagagaattcctccagctgatgccattttgttgaaggtaaagtgttcattgttgtt-ggttaattcattttgaattattccattg |
199 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||| |
|
|
| T |
31714427 |
ggtggagatatgtttaagagaattcctccagctgatgctattttgttgaaggtaaagtgttctatgatgttgggttaattcattttgaattattccattg |
31714526 |
T |
|
| Q |
200 |
tttgatttatg |
210 |
Q |
| |
|
||||||||||| |
|
|
| T |
31714527 |
tttgatttatg |
31714537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 31711358 - 31711513
Alignment:
| Q |
1 |
aaaggctcttgccaaatcattcccacaaatggaccgcactgtgtttgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactatgtt |
100 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||| |
|
|
| T |
31711358 |
aaagactcttgtcaaatcattcccacaaatggagtgcattgtgtttgatcttccacatgttgttgatggcttgcaaggaagtgaaaagctaagatatgtt |
31711457 |
T |
|
| Q |
101 |
ggtggagacatgtttgagagaattcctccagctgatgccattttgttgaaggtaaa |
156 |
Q |
| |
|
||||||||||||||| || |||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
31711458 |
ggtggagacatgtttaaggaaattccaccagcagatgcaattttgttgaaggtaaa |
31711513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 155
Target Start/End: Original strand, 31684390 - 31684539
Alignment:
| Q |
6 |
ctcttgccaaatcattcccacaaatggaccgcactgtgtttgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactatgttggtgg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||| |
|
|
| T |
31684390 |
ctcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgctaggaagtgaaaacttaaactatgttggtgg |
31684489 |
T |
|
| Q |
106 |
agacatgtttgagagaattcctccagctgatgccattttgttgaaggtaa |
155 |
Q |
| |
|
|||||||||| | |||||| ||| | | ||| |||||||||||||||| |
|
|
| T |
31684490 |
agacatgtttaaagaaattccgccaacagctgcaattttgttgaaggtaa |
31684539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 31734772 - 31734921
Alignment:
| Q |
9 |
ttgccaaatcattcccacaaatggaccgcactgtgtttgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactatgttggtggaga |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||||||||| ||| || ||| ||||||||||||||| |
|
|
| T |
31734772 |
ttgccaaatcattcccacaaatggagtgcattgtgtttgatctaccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggaga |
31734871 |
T |
|
| Q |
109 |
catgtttgagagaattcctccagctgatgccattttgttgaaggtaaagt |
158 |
Q |
| |
|
||||||| | |||||| ||| | ||||| ||| ||||||||||||||| |
|
|
| T |
31734872 |
catgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagt |
31734921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 31702924 - 31703084
Alignment:
| Q |
1 |
aaaggctcttgccaaatcattcccacaaatggaccgcactgtgtttgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactatgtt |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||| ||| || ||||||||||| |
|
|
| T |
31702924 |
aaaggcccttgctaaatcattcccacaaatggagtttagtgtatttgatctaccacatgttgttgatggcttgcaaggtagtgagaatctaaactatgtt |
31703023 |
T |
|
| Q |
101 |
ggtggagacatgtttgagagaattcctccagctgatgccattttgttgaaggtaaagtgtt |
161 |
Q |
| |
|
||||||||||||||| | |||||||||| | || |||||||||||||||||||| |||| |
|
|
| T |
31703024 |
ggtggagacatgtttaaagaaattcctccaacagacgccattttgttgaaggtaaaatgtt |
31703084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 30570387 - 30570461
Alignment:
| Q |
44 |
tttgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactatgttggtggagacatgtttgag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||| |||||||| |||||||| || |||||||||||| |
|
|
| T |
30570387 |
tttgatcttccacatgttgttgatggcttacaaggaagtgaaaacttaaaatatgttggaggtgacatgtttgag |
30570461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University