View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19911_low_3 (Length: 423)
Name: NF19911_low_3
Description: NF19911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19911_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 51416767 - 51416360
Alignment:
| Q |
1 |
cctgcgacatgcacatgatgtgctatctcactcaatcagcattaacaatgatgatgatccaaccatctctgtgaactcctctgccgcctggtcaacatga |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51416767 |
cctgctacatgcacatgatgtgctatctcactcaatcagcattaacaatgatgatgatccaaccatctctgtgaactcctctgccgcctggtcaacatga |
51416668 |
T |
|
| Q |
101 |
aactctttctgctcctccgccctctccctcgtcatctttacgcgcctccattcatttctggttccacgacataccctcatttaccgccggagataatagc |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51416667 |
aagtctttctgctcctccgccctctccctcgtcatctttacgcgcctccattcatttctggttccacgacataccctcatttaccgccggagataatagc |
51416568 |
T |
|
| Q |
201 |
tttctcctactgctgctggcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacgaaatacatatctgat |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51416567 |
tttctcctactgctgcttgcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacgaaatacatatctgat |
51416468 |
T |
|
| Q |
301 |
atgaacaattccttttatagaagttagattctcagcagtctaacttttgctgcattcatgcattccacacatctgccactgggggcagaggagaaactag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51416467 |
atgaacaattccttttatagaagttagattctcagcagtctaacttttactgcattcatgcattccacacatctgccactgggggcagaggagaaactag |
51416368 |
T |
|
| Q |
401 |
gccatgat |
408 |
Q |
| |
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|||||||| |
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| T |
51416367 |
gccatgat |
51416360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 51418584 - 51418479
Alignment:
| Q |
187 |
ccggagataatagctttctcctactgctgctggcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacga |
286 |
Q |
| |
|
|||||||||||||||| |||||||| ||| | |||||| |||| |||| |||||||| |||||||||||||||||||||| ||||||||||||| | |
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| T |
51418584 |
ccggagataatagcttcctcctactactgtttgcacca----cgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaataa |
51418489 |
T |
|
| Q |
287 |
aatacatatc |
296 |
Q |
| |
|
|||||||||| |
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|
| T |
51418488 |
aatacatatc |
51418479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 296
Target Start/End: Complemental strand, 51413535 - 51413426
Alignment:
| Q |
186 |
gccggagataatagctttctcctactgctgctggcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacg |
285 |
Q |
| |
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|||||||| || ||||| |||||||| |||||||| ||| | |||| |||| | |||||| |||| ||||||||||||||||| ||||||||||||| | |
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| T |
51413535 |
gccggagacaaaagcttcctcctactactgctggcgccac-cgcgagagagacgaggtggactgctactacagctgaactgatactccaacggtgaaatg |
51413437 |
T |
|
| Q |
286 |
aaatacatatc |
296 |
Q |
| |
|
||||||||||| |
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|
| T |
51413436 |
aaatacatatc |
51413426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 51413666 - 51413628
Alignment:
| Q |
72 |
tgaactcctctgccgcctggtcaacatgaaactctttct |
110 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||| |
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|
| T |
51413666 |
tgaactcttccgccgcctggtcaacatgaaactctttct |
51413628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 51418659 - 51418602
Alignment:
| Q |
129 |
tcgtcatctttacgcgcctccattcatttctggttccacgacataccctcatttaccg |
186 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||| | | |||||||||| ||| |
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| T |
51418659 |
tcgtcatcttcacgcgcctcccttcatttctggttccataatacaccctcatttgccg |
51418602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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