View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19912_high_1_N (Length: 413)
Name: NF19912_high_1_N
Description: NF19912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19912_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 65 - 325
Target Start/End: Original strand, 2018327 - 2018587
Alignment:
| Q |
65 |
gtctcgtccaaagattacggaattaacccttgcacaatattaaccctacaaaaataaaactagggttcacacttatacctcgctgtgaacaagaacaacc |
164 |
Q |
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| T |
2018327 |
gtctcgtccaaagattacggaattaacccttgcacactattaaccctacaaaaataaaactagggttcacacttatacctcgctgtgaacaagaacaacc |
2018426 |
T |
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| Q |
165 |
atggaatcactacctgacgacgttctgtatcacattctgtcgttccttccgacgagggatgctgttgctactagccttctgtcaaagagatggaaaccac |
264 |
Q |
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| T |
2018427 |
atggaatcactacctgacgacgttctgtgtcacattctgtcgttccttccgacgagggatgctgttgctactagccttctgtcaaagagatggaaaccac |
2018526 |
T |
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| Q |
265 |
tctggctctccctccgttccttcgaccttgatgacaactacttttccgacttccacaggtt |
325 |
Q |
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| T |
2018527 |
tctggctctccttccgttccttcgaccttgatgacaactacttttccgacttccacaggtt |
2018587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 174 - 289
Target Start/End: Original strand, 2005585 - 2005700
Alignment:
| Q |
174 |
ctacctgacgacgttctgtatcacattctgtcgttccttccgacgagggatgctgttgctactagccttctgtcaaagagatggaaaccactctggctct |
273 |
Q |
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| T |
2005585 |
ctacctgacgatcttcgatgtcacattctgtcatgccttccgacgagagatgcgtctgctactagccttctgtcaaagagatggaaaccactttggctct |
2005684 |
T |
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| Q |
274 |
ccctccgttccttcga |
289 |
Q |
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| T |
2005685 |
cactccgttccttcga |
2005700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 177 - 286
Target Start/End: Original strand, 2011762 - 2011871
Alignment:
| Q |
177 |
cctgacgacgttctgtatcacattctgtcgttccttccgacgagggatgctgttgctactagccttctgtcaaagagatggaaaccactctggctctccc |
276 |
Q |
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| T |
2011762 |
cctgacgatgttcggtgtcacattctctcattccttccaacgagagatgctgctgctacaagtcttctatcaaagagatggaaaccactttggctctcgc |
2011861 |
T |
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| Q |
277 |
tccgttcctt |
286 |
Q |
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| T |
2011862 |
tccgttcctt |
2011871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 913263 - 913229
Alignment:
| Q |
350 |
caagaagaaaggcattgatgatagtatataacaac |
384 |
Q |
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| T |
913263 |
caagaagaaaggcattgatgatagtatataacaac |
913229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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