View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19912_high_4 (Length: 348)
Name: NF19912_high_4
Description: NF19912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19912_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 2451653 - 2451987
Alignment:
| Q |
1 |
ataagtgagtcatacttgaattcgtataaatggatcaaatgtgcaaatgaatagggaggttaggtggctcagcttttaagttaacggttaaggagtttaa |
100 |
Q |
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| T |
2451653 |
ataagtgagtcatacttgaattcgtataaatggatcaaatgtgcaaatgaatagggaggttaggtggctcagcttttaagttaacggttaaggagtttaa |
2451752 |
T |
|
| Q |
101 |
atgtccaagtttcaagtcctggcaaa-agagaataacactaacataccaattagccacttgataatatctcttagatgtttaccatgctttaattgttta |
199 |
Q |
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| T |
2451753 |
atgtccaagtttcaagtcctggcaaagagagaataacactaacataccaattagccacttgataatatcccttagatgtttaccatgcgttaattgtcta |
2451852 |
T |
|
| Q |
200 |
tgcatgctactactttcctcatatgttaaactagtatggatatctatgccaaacacgaactagaattttgtcatatttaaaatattttgtggcaaacgtg |
299 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
2451853 |
tgcatgctactactttcctcatatgttaaactattatggatatctatgccaaacacgaactagaattttgtcatatttaaaatattttgtactgagcgtg |
2451952 |
T |
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| Q |
300 |
gattagatatggatacatgtggtttctttctgtcc |
334 |
Q |
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||||||||||||||||||||| ||||||||||||| |
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| T |
2451953 |
gattagatatggatacatgtgatttctttctgtcc |
2451987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 7333247 - 7333191
Alignment:
| Q |
229 |
actagtatggatatctatgccaaacacgaactagaattttgtcatatttaaaatatt |
285 |
Q |
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||||||||||| | | |||||||||||| ||||||||| || |||||||||||||| |
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| T |
7333247 |
actagtatggaaacccgtgccaaacacgagctagaatttcgtgatatttaaaatatt |
7333191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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