View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_108 (Length: 207)
Name: NF19913_high_108
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_108 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 30784094 - 30784269
Alignment:
| Q |
16 |
atgaaccttttcactttcatatcttagactactagtaaatatcttacatgtcttcaaatcatcattagcatacatgttttgcttgtactcattaggcatc |
115 |
Q |
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| T |
30784094 |
atgaaccttttcagtttcatatctaagactgctagtaaacttcctacatgtcttcaaatcatcattagcatacatgttttgcttgtactcattaggcatc |
30784193 |
T |
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| Q |
116 |
tcaaacacctccttgaaaacactcgttgtttccttcatttcattcattgagattccatgattgataacctacttca |
191 |
Q |
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| T |
30784194 |
tcaaacacctccttgaaaacactcattgtttctttcatttgattcattgagattccatgattgataacctacttca |
30784269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 30741704 - 30741865
Alignment:
| Q |
16 |
atgaaccttttcactttcatatcttagactactagtaaatatcttacatgtcttcaaatcatcattagcatacatgttttgcttgtactcattaggcatc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||| |||||| |||| | ||||| |
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| T |
30741704 |
atgaaccttttcactttcatatcttagactactagtaaatatcttacatgtcttcaaatcatcatcaagatataagtttttcttgtattcataacgcatc |
30741803 |
T |
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| Q |
116 |
tcaaacacctccttgaaaacactcgttgtttccttcatttcattcattgagattccatgatt |
177 |
Q |
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| T |
30741804 |
tcaaacacctccttgaaaatactcattgtttccttcatttcattcttcgagattccatgatt |
30741865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 30749348 - 30749520
Alignment:
| Q |
14 |
agatgaaccttttcactttcatatcttagactactagtaaatatcttacatgtcttcaaatcatcattagcatacatgttttgcttgtactcattaggca |
113 |
Q |
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| T |
30749348 |
agatgaaccttatcacattcatatttcaaggtgctagaaaacatcttgcatgtcttcaaaatctcctcaggatacaagtcgtgcttgtattcattaggct |
30749447 |
T |
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| Q |
114 |
tctcaaacacctccttgaaaacactcgttgtttccttcatttcattcattgagattccatgattgataaccta |
186 |
Q |
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| T |
30749448 |
tctcaaacacctccttgaaaatactcattgtttccttcatttcatccaacgagagaccatgattgataaccta |
30749520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 30770799 - 30770971
Alignment:
| Q |
14 |
agatgaaccttttcactttcatatcttagactactagtaaatatcttacatgtcttcaaatcatcattagcatacatgttttgcttgtactcattaggca |
113 |
Q |
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| T |
30770799 |
agatgaaccttatcacattcatatttcaaggtgctagaaaacatcttgcatgtcttcaaaatctcctcaggatacaagtcgtgcttgtattcattaggct |
30770898 |
T |
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| Q |
114 |
tctcaaacacctccttgaaaacactcgttgtttccttcatttcattcattgagattccatgattgataaccta |
186 |
Q |
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| T |
30770899 |
tctcaaacacctccttgaaaatactcattgtttccttcatttcatccaacgagagaccatgattgataaccta |
30770971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 30761557 - 30761729
Alignment:
| Q |
14 |
agatgaaccttttcactttcatatcttagactactagtaaatatcttacatgtcttcaaatcatcattagcatacatgttttgcttgtactcattaggca |
113 |
Q |
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| T |
30761557 |
agatgaaccttatcaaattcatatttgaaagtgctagaaaacatcttacatgtcttcaaattgttctcaggatacaagtcgtgtttgtattcattaggct |
30761656 |
T |
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| Q |
114 |
tctcaaacacctccttgaaaacactcgttgtttccttcatttcattcattgagattccatgattgataaccta |
186 |
Q |
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| T |
30761657 |
tctcaaacacctccttaaaaacactcattgcttccttcatttcatccaacgagagaccatgattgataaccta |
30761729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 30809019 - 30809187
Alignment:
| Q |
14 |
agatgaaccttttcactttcatatcttagactactagtaaatatcttacatgtcttcaaatcatcattagcatacatgttttgcttgtactcattaggca |
113 |
Q |
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||||||||||||||||| ||||| | | |||||||||||| |||||||||| || || ||||||| | ||| ||| ||||||||||| ||||| |
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| T |
30809019 |
agatgaaccttttcactgtcatagttgatactactagtaaacatcttacatggttttgaagggtcattagaacacaaacttttcttgtactcatcaggca |
30809118 |
T |
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| Q |
114 |
tctcaaacacctccttgaaaacactcgttgtttccttcatttcattcattgagattccatgattgataa |
182 |
Q |
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| T |
30809119 |
tatgaaacacctccttaaaaacattcattgtttctttcatttgattcactgggactccatgattgataa |
30809187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 30801549 - 30801720
Alignment:
| Q |
14 |
agatgaaccttttcactttcatatcttagactactagtaaatatcttacatgtcttcaaatcatcattagcatacatgttttgcttgtactcattaggca |
113 |
Q |
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||||||||||||||| || |||| | | ||| |||||||| ||||| |||| ||| || ||||||| | ||| ||||| ||||||||||| ||||| |
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| T |
30801549 |
agatgaaccttttcagttgcatagttgaaactgctagtaaacatcttgcatggcttggaagggtcattagtacacaagtttttcttgtactcatcaggca |
30801648 |
T |
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| Q |
114 |
tctcaaacacctccttgaaaacactcgttgtttccttcatttcattcattgagattccatgattgataacct |
185 |
Q |
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| T |
30801649 |
tatgaaaaatctccttaaaaatactcattgtttccttcatttgatccattgaaatcccatgattaataacct |
30801720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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