View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_14 (Length: 471)
Name: NF19913_high_14
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 15 - 450
Target Start/End: Original strand, 48532830 - 48533275
Alignment:
| Q |
15 |
aagaagaggaagaatttaatttgcataaaatactaatagttggataaacatgannnnnnnaagcacttgactaagctccattcaagcttagaaccgaaaa |
114 |
Q |
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| T |
48532830 |
aagaagaggaagaatttaatttgcataaaatactaatagttggatgaacatgatttttttaagcacttgcctaagctccattcaagcttagaaccgaaaa |
48532929 |
T |
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| Q |
115 |
aatggagcttgtaacgattacttaataaagaaagccacaaaattaaatgaaagctataagaaacatacattcatgtataattgattaagttaaaagtaat |
214 |
Q |
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| T |
48532930 |
aatggagcttggaacgatcacttaataaagaaagccacaaaattaaatgaaagctataagaaacatacattcatgtataattgattaagttaaaagtaat |
48533029 |
T |
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| Q |
215 |
tggaatggaagaacaacgaccagaaacaaaagtttgattgagttgatgccaaagccccgtgaattgcatttaatacataagatggatttctccaatagaa |
314 |
Q |
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| T |
48533030 |
tggaatagaagaacaacgaccagaaacaaaagtttgattgagttgatgccaaagccccgtgaattgcatttaatatataagatggatttctccaatagaa |
48533129 |
T |
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| Q |
315 |
atgaattgagaaaaatatcaaatagaaatgaattaa---------gtttgttccatgaactaaaccaacaataac-aaaacatatactatactagaatgc |
404 |
Q |
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| T |
48533130 |
atgaattgagaaaaatatcaaatagaaatgaattaagtttgttttgtttgttccatgaaccaaaccaacaataacaaaaacatatactatactagaatgc |
48533229 |
T |
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| Q |
405 |
ttttagaaacagcctaaagaacaacaacagaactaggctaggctgg |
450 |
Q |
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| T |
48533230 |
ttttagaaacagcctaaagaacaacaacagaactaggctaggctgg |
48533275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 139 - 285
Target Start/End: Original strand, 48535797 - 48535940
Alignment:
| Q |
139 |
ataaagaaagccacaaaattaaatgaaagctataagaaacatacattcatgtataattgattaagttaaaagtaattggaatggaagaacaacgaccaga |
238 |
Q |
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| T |
48535797 |
ataaagaaaaccacacaattaaatgaaagctataagaatcatacattcatatataattgatt-agtgaaaagtaattggaatggaagaacaaccaccaaa |
48535895 |
T |
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| Q |
239 |
aacaaaagtttgattgagttgatgccaaagccccgtgaattgcattt |
285 |
Q |
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| T |
48535896 |
aac--aagttttattgagtcgatgcccaagccccgtgaattgcattt |
48535940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 48535654 - 48535745
Alignment:
| Q |
27 |
aatttaatttgcataaaatactaatag-ttggataaacatgannnnnnnaagcacttgactaagctccattcaagcttagaaccgaaaaaat |
117 |
Q |
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| T |
48535654 |
aatttaatttgaataaaatactaataggttggatgaacattatttttttaagcacttgcctaagctccattcaagcttagaaccaaaaaaat |
48535745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 455
Target Start/End: Original strand, 48536082 - 48536193
Alignment:
| Q |
351 |
gtttgttccatgaactaaaccaacaataacaaaacatatactatactagaatgcttttagaaacagcct-----aaagaac-----aacaacagaactag |
440 |
Q |
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| T |
48536082 |
gtttgttccatgaaccaa-ccaacaataacaagacata--ctatactggaatgcttttataaacagcctaaaccaaagaacaacgtaacaacagaactag |
48536178 |
T |
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| Q |
441 |
gctaggctggtgctg |
455 |
Q |
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| T |
48536179 |
gctaggctggtgctg |
48536193 |
T |
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